SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene10363

Length: 1121 nt

Origin of reads: Biogeco_1 Uagpf Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene10363

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	DWARF1/DIMINUTO n=1 Tax=Solanum lycopersicum RepID=Q66YT8_SOLLC	-	-	56%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	80%
Blast2go	cell elongation protein	-	-	74%

Source	GOs	Term	Type	e value	Identity
Blast2go	catalytic activity	GO:0003824	Molecular Function	0.0	74%

Source	InterPros	Term	Type	Identity
Blast2go	FAD linked oxidase, N-terminal	IPR006094	-	74%
Blast2go	FAD-binding, type 2	IPR016166	-	74%
Blast2go	FAD-linked oxidase, FAD-binding, subdomain 2	IPR016168	-	74%

Full-Lengther Next Prediction

Fln status: Putative Complete

Fln database: coniferopsida.fasta

Fln subject: D5AAC1

Fln msg: Overlapping hits, possible frame ERROR between 146 and 136, STOP codon was not found. Distance to subject end: 54 aas, your sequence is longer than subject: 356 - 302

Fln protein: MASPGSGRQRAKRPNSFADFLVQFRWVxxxxxIVLPLSFLFYQYIQWRATIRRLIHGPPSEETHRRAIKKVQDRIKTRRPKSDGMICTGRRPWLEVSMRHSEHKRSHRFEVDLSHLTDIVWVDRERMLIKCEPMVCMSEVSAAVLPLGMAPQVLPELDDLTVGGVINGYGIEGSSHLFGLFSDTCVAYELVLADGSLVRVTADNEYSDLFHAVPWSHGSIGLLVGAEFRLTPVKEYMKVTYSPVTGTLDDIASHYLKSFRLPQNDYEEKVPDFVETMIFNDTNAVITTGRYASREEATRKGNVINEIGWWYKAWFHTHVATALKRGKFVEYVPAREYHHRHTRSLYWEGALIVPMG

Protein Length: 357

Fln nts: CGTCGTGACCTTGGCTGTCACTCAGTCGTGTTTGATTTGGGTTTTTGGACGAA_-_ATGGCGTCGCCCGGCAGTGGTCGTCAGAGGGCGAAGCGCCCGAATTCGTTTGCAGATTTTCTGGTGCAGTTCAGATGGGTGxxxxxxxxxxxxxxxATCGTTCTGCCTCTGTCCTTCTTGTTCTATCAGTATATCCAATGGCGGGCAACTATACGGCGCCTGATACACGGCCCCCCGTCGGAGGAGACGCACAGGCGGGCAATCAAGAAAGTGCAGGATCGCATCAAGACCCGGCGCCCGAAGTCCGACGGGATGATCTGCACGGGACGTAGGCCGTGGCTGGAAGTCTCCATGAGGCATTCCGAGCACAAGCGTTCTCACAGGTTCGAGGTGGATCTCTCCCATCTCACAGACATTGTGTGGGTGGACAGGGAGAGGATGCTCATCAAATGCGAGCCCATGGTTTGCATGTCAGAGGTTAGTGCCGCCGTGCTGCCTCTGGGGATGGCGCCCCAGGTGCTCCCCGAGCTGGATGATCTCACCGTGGGCGGGGTCATCAATGGCTACGGCATCGAGGGCAGCAGCCACCTGTTTGGCCTCTTCTCCGATACCTGCGTTGCGTATGAGCTCGTCTTGGCTGATGGGTCTCTGGTCAGGGTCACTGCTGACAATGAGTACTCTGACCTCTTCCATGCAGTGCCCTGGTCGCATGGCTCCATTGGCTTGCTTGTCGGAGCCGAGTTCCGACTCACTCCCGTCAAGGAATACATGAAGGTCACTTACAGTCCTGTCACCGGTACCCTGGACGACATCGCCAGTCACTACTTGAAATCTTTCCGCCTTCCTCAAAACGATTACGAAGAAAAGGTGCCTGATTTCGTTGAAACTATGATCTTCAACGACACAAACGCTGTGATCACAACAGGCAGGTATGCTTCAAGAGAAGAGGCAACGCGCAAAGGGAATGTGATTAATGAGATTGGATGGTGGTATAAGGCTTGGTTCCACACTCATGTTGCCACCGCGTTGAAGAGAGGCAAGTTTGTTGAGTATGTGCCTGCTCGGGAGTATCACCATCGGCACACCAGATCCTTGTATTGGGAAGGCGCTCTCATTGTCCCCATGGGGAA

Fln Alignment:

sp_v1.1_unigene10363___MASPGSGRQRAKRPNSFADFLVQFRWVxxxxIVLPLSFLFYQYIQWRATIRRLIHGPPSEETHRRAIKKVQDRIKTRRPKSDGMICTGRRPWLEVSMRHSEHKRSHRFEVDLSHLTDIVWVDRERMLIKCEPMVCMSEVSAAVLPLGMAPQVLPELDDLTVGGVINGYGIEGSSHLFGLFSDTCVAYELVLADGSLVRVTADNEYSDLFHAVPWSHGSIGLLVGAEFRLTPVKEYMKVTYSPVTGTLDDIASHYLKSFRLPQNDYEEKVPDFVETMIFNDTNA
D5AAC1_______________MGMPGCGRQRAKRPNSFADFLVQFRWVxxxxIVLPLSFLFYQYIQWRATIRRLIHGPPSEEKHRQAIKKVQDRIKRRHPKLDGMICTARRPWLEVSMRHSEHKRSHRFEVDLSHLTDIVWVDRERMLIKCEPMVCMSEVSAAVLPLGMAPQVLPELDDLTVGGVINGYGIEGSSHLFGLFSDTCVAYELVLVDGSLVRATADNEYSDLFHAVPWSHGSIGLLVGAEFRLTPVKEYMKVTYSPVTGNLDDIANHYLESFRPPQNDYEEKVPDFVETMIFNETNA

SNPs (tot: 12)

Position	A %	C %	G %	T %	Probability
407			10	90	0.90298
409			10	90	0.90298
430		10		90	0.90298
533		87		12	0.992554
551		12		87	0.992554
711			64	35	1.0
946		90		10	0.90298
1031	90			10	0.90298
1033			10	90	0.90298
1034			10	90	0.90298
1083		71		28	1.0
1119	20		80		0.995493

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain