SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene10344

Length: 1369 nt

Origin of reads: Biogeco_1 Uagpf Uma

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v1.1_unigene10344 (antisense)

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Ubiquitin-activating enzyme E1 n=2 Tax=Selaginella moellendorffii RepID=D8RCF4_SELML	-	-	62%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	33%
Blast2go	ubiquitin-activating enzyme e1	-	-	64%

Source	GOs	Term	Type	Identity
Blast2go	auxin biosynthetic process	GO:0009851	Biological Process	64%
Blast2go	protein modification process	GO:0006464	Biological Process	64%
Blast2go	ligase activity	GO:0016874	Molecular Function	64%
Blast2go	small protein activating enzyme activity	GO:0008641	Molecular Function	64%
Blast2go	protein binding	GO:0005515	Molecular Function	64%
Blast2go	ATP binding	GO:0005524	Molecular Function	64%

Source	InterPros	Term	Type	Identity
Blast2go	Ubiquitin-activating enzyme repeat	IPR000127	-	64%
Blast2go	Molybdenum cofactor biosynthesis, MoeB	IPR009036	-	64%
Blast2go	Ubiquitin-activating enzyme e1, C-terminal	IPR018965	-	64%
Blast2go	Ubiquitin-like 1 activating enzyme, catalytic cysteine domain	IPR023280	-	64%

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: A9NU65

Fln msg: your sequence is shorter than subject: 346 - 379

Fln protein: RDLGCHSNFPVDMKTTAGAPFWSGTKRLPRALSFDPEDPLHMDFIVAAANLQATVYGLKGCQDQRHFMQILEKFQVAEFKPKEGVKIAVSDSEIRSTTQGNASATGQSYDAGSPSDILRELPAPATLVGYRLSSIDFDKDDEKNFHSEFVHATANLRAQNYGIYLSDKLQARLVGGKAIPSIVTADAVVGGLMCLEVYKILQEKPLEDYRHSYFNLSLPMFVSAHPIKAVENTVLRSEKEPLLWTLWDKFEMECIGMSLQTFLSEFKQQHGLEVNMIMYGKSLLYAEFLPKKRMQERMHLTLLELVHNVGKVTVPMTENKLILSLTCTDANDLDVEVPDIIARVR*

Protein Length: 347

Fln nts: TCGTGACCTTGGCTGTCACTCAAATTTCCCTGTTGACATGAAAACAACAGCGGGGGCACCCTTTTGGAGTGGTACAAAAAGGTTACCAAGAGCTTTAAGCTTTGACCCTGAGGATCCTCTCCATATGGATTTCATTGTTGCTGCAGCAAACCTACAGGCAACTGTTTATGGACTTAAAGGTTGCCAGGATCAGAGGCATTTTATGCAAATCCTTGAAAAGTTTCAAGTGGCAGAATTCAAACCCAAGGAAGGTGTGAAAATAGCAGTATCTGATAGTGAAATTCGAAGCACGACCCAAGGAAATGCTAGTGCAACTGGTCAAAGCTATGATGCTGGAAGTCCATCAGATATTCTTCGTGAACTGCCTGCTCCTGCAACCCTTGTGGGCTATCGGCTATCTTCCATAGATTTTGACAAGGATGATGAAAAAAATTTTCATTCTGAGTTTGTACATGCAACAGCAAACCTGCGAGCACAAAACTATGGAATATACCTTTCAGATAAGTTACAGGCAAGGCTTGTTGGTGGGAAGGCAATTCCTTCAATTGTTACTGCAGATGCAGTTGTTGGGGGGTTGATGTGTCTGGAGGTGTACAAAATCCTGCAAGAGAAGCCTTTGGAGGATTATAGGCATTCATATTTTAACCTGTCTTTGCCAATGTTTGTATCTGCTCACCCAATTAAGGCGGTAGAGAATACGGTTTTAAGGAGTGAAAAAGAGCCATTATTGTGGACCCTTTGGGACAAGTTTGAAATGGAATGTATTGGAATGTCTTTGCAGACATTCCTTTCTGAATTTAAGCAGCAACATGGACTGGAGGTTAACATGATTATGTATGGAAAGAGCCTCCTGTATGCAGAATTTTTGCCCAAGAAAAGGATGCAGGAGAGGATGCATTTGACTCTTCTTGAACTTGTACATAATGTTGGGAAGGTCACAGTTCCTATGACTGAAAATAAATTGATCCTTTCATTAACATGTACAGATGCAAATGATTTAGATGTTGAAGTTCCAGACATAATTGCCAGGGTTCGATAA___TATGGGGATAAGCTCCCCTTTGAAAAACATTTTATAACATCATTTTATTCTGTATATTTATTTCTCAATGAAAATAAGTAATGGTAATGCTATCAAAAGCTGTTGAGGGGAAATTGTCTAGACAGTAAAATCTTCAGTTAATACAGTATTATAGCATGCCAGGTCTTTGCTTCAGTAATTCACCACGGTACATCCTCAAGAGGTTTGTTCTGCATTATAGAGTTCTAGGAAACATAAGAAATTTAAGCCTAAATTTCACTTGTTTATGCTACCCTGTATTGCAAAATATAATCCTTAAATGAGGATTGTTTGCAAAATTTCATTAGACAT

Fln Alignment:

sp_v1.1_unigene10344___FPVDMKTTAGAPFWSGTKRLPRALSFDPEDPLHMDFIVAAANLQATVYGL---KGCQDQRHFMQILEKFQVAEFKPKEGVKIAVSDSEIRSTTQGNASATGQSYDAGSPSDILR--ELPAPATLVGYRLSSIDFDKDDEKNFHSEFVHATANLRAQNYGIYLSDKLQARLVGGKAIPSIVTADAVVGGLMCLEVYKILQEKPLEDYRHSYFNLSLPMFVSAHPI--KAVENTVLRSEKEPLLWTLWDKFEMECIGMSLQTFLSEFKQQHGLEVNMIMYGKSLLYAEFLPKKRMQERMHLTLLELVHNVGKVTVPMTENKLILSLTCTDANDLDVEVP
A9NU65_______________FPENATTSGGAPFWSAPKRFPKPLEFSSNDPSHMSLIAAASILRANTYGIPIPEWASNSKELAEAVDKVQISVFKPKQGVKIVTDEK----ATNMHPSTID---DSAVIDNLIRTLEIGVKNLSSGFRMSPIQFEKDDDTNYHMDLIAGFANMRARNYSIPEVDKLKAKFIAGRIIPAIATTTAMATGLVCLELYKVILDHKVEKYRNTFANLALPLFSMAEPVPPKIIKHGVLS-------WSVWDRWVI-AGNLTLRELLDWF-QDKGLSAYSISCGQSLIYNSIFPKHK--ERLDRKVVDLARDIAKLEIPPNRRHFDIVVACEDDDGNDVDVP

SNPs (tot: 41)

Position	A %	C %	G %	T %	Probability
754	90			10	0.90298
756	10		90		0.90298
757		90	10		0.90298
759			10	90	0.90298
760	10	90			0.90298
763	11			88	0.923564
764			11	88	0.923564
765		11	88		0.923564
768	11		88		0.923564
770	88		11		0.923564
772		11		88	0.923564
773	11			88	0.923564
774		11		88	0.923564
779	88		11		0.923564
836		14	85		0.993533
852			83	16	0.994512
853		83	16		0.994512
854	16	83			0.994512
855			16	83	0.994512
858	16	83			0.994512
860	16			83	0.994512
862		16		83	0.994512
865		83	16		0.994512
866			16	83	0.994512
868	83	16			0.994512
869	16			83	0.994512
874	83	16			0.994512
875	83		16		0.994512
1177		85	14		0.993533
1178	14			85	0.993533
1180	85			14	0.993533
1181			14	85	0.993533
1182	14	85			0.993533
1184	14			85	0.993533
1186		14	85		0.993533
1191		85	14		0.993533
1192			14	85	0.993533
1194		14		85	0.993533
1196	83	16			0.994512
1198	16			83	0.994512
1200		83	16		0.994512

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain