SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene10333

Length: 1105 nt

Origin of reads: Biogeco_1 Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene10333

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	dihydropyrimidinase (EC:3.5.2.2); K01464 dihydropyrimidinase [EC:3.5.2.2]	-	-	75%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	94%
Blast2go	protein	-	-	88%

Source	ECs	Term	Type	e value	Identity
Blast2go	Dihydropyrimidinase.	EC:3.5.2.2	-	0.0	88%

Source	KEGGs	Term	Identity
Blast2go	Pyrimidine metabolism	00240	88%
Blast2go	beta-Alanine metabolism	00410	88%
Blast2go	Pantothenate and CoA biosynthesis	00770	88%
Blast2go	Drug metabolism - other enzymes	00983	88%
Blast2go	Metabolic pathways	01100	88%

Source	ECs	Term	Type	e value	Identity
AutoFact	Dihydropyrimidinase.	EC:3.5.2.2	-	0.0	75%

Source	KEGGs	Term	Identity
AutoFact	Pyrimidine metabolism	00240	75%
AutoFact	beta-Alanine metabolism	00410	75%
AutoFact	Pantothenate and CoA biosynthesis	00770	75%
AutoFact	Drug metabolism - other enzymes	00983	75%
AutoFact	Metabolic pathways	01100	75%

Source	GOs	Term	Type	Identity
Blast2go	uracil catabolic process	GO:0006212	Biological Process	88%
Blast2go	cellular response to nitrogen levels	GO:0043562	Biological Process	88%
Blast2go	dihydropyrimidinase activity	GO:0004157	Molecular Function	88%
Blast2go	endomembrane system	GO:0012505	Cellular Component	88%
Blast2go	cytoplasmic membrane-bounded vesicle	GO:0016023	Cellular Component	88%

Source	InterPros	Term	Type	Identity
Blast2go	Amidohydrolase 1	IPR006680	-	88%
Blast2go	Metal-dependent hydrolase, composite domain	IPR011059	-	88%
Blast2go	Hydantoinase/dihydropyrimidinase	IPR011778	-	88%

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: B8LLK4

Fln msg: your sequence is shorter than subject: 334 - 530

Fln protein: MAYKGELMVKDELLLQGFKMCKALGAIALVHAENGEAIAEGQSRMIELGITGPEGHALSRPSMLEGEATARAIRLAQFVNTPLYVVHVMSIDALDEIVRARQSGLRVIGEPIVASLVLDGSKLWDPDFRIASKYVMSPPIRESGHNKALQAALSTGLLQLVGTDHCPFNSTQKAAGINDFRKIPNGVNGIEERMHLIWDVMVNSGQISVMDYVRITSTTCAQIFNIYPRKGAILPNSDADIIILNPNATFQISAKSHHSKIDTNVYEGWEGKGKVEVTISRGKVVWEHDKLMVEPGSGRYISMPPFGYLFHGMDKMDSAYLSSLKAPVYREVI*

Protein Length: 335

Fln nts: ATGGCATACAAAGGGGAGCTCATGGTAAAAGATGAGCTACTTTTACAAGGTTTCAAAATGTGCAAAGCTTTAGGTGCCATAGCTCTAGTTCATGCCGAAAATGGGGAAGCAATAGCAGAAGGACAATCTCGAATGATTGAACTGGGTATAACTGGTCCAGAGGGTCATGCACTTTCCAGGCCTTCAATGCTAGAAGGTGAGGCCACTGCTAGAGCCATCCGGTTAGCACAGTTTGTCAACACACCCCTGTATGTTGTCCATGTGATGAGCATCGATGCCCTCGATGAAATTGTCAGGGCTCGTCAATCTGGTCTAAGGGTAATAGGAGAGCCAATAGTTGCCAGCTTAGTCCTTGATGGTTCTAAGCTTTGGGATCCTGACTTCAGGATTGCTTCCAAGTATGTGATGAGTCCACCAATAAGGGAATCTGGGCACAACAAAGCCCTTCAGGCTGCTCTTTCAACAGGACTTCTACAGCTGGTGGGAACAGATCACTGTCCATTCAACTCAACGCAAAAAGCAGCTGGGATAAATGATTTTCGAAAAATTCCAAATGGTGTAAATGGAATTGAAGAGAGGATGCACTTAATTTGGGACGTAATGGTGAACTCTGGTCAAATATCAGTGATGGATTATGTTCGTATCACTAGTACAACATGTGCACAGATATTCAATATATATCCAAGGAAAGGGGCAATTCTCCCCAACTCAGATGCAGACATAATCATTCTGAATCCAAATGCAACATTTCAAATATCTGCCAAATCTCACCACTCAAAGATAGACACAAACGTCTACGAAGGTTGGGAAGGAAAGGGTAAAGTTGAAGTTACAATTTCAAGAGGTAAAGTTGTCTGGGAACATGACAAATTGATGGTTGAGCCAGGTTCAGGGCGATACATATCCATGCCTCCTTTTGGTTATCTTTTCCATGGCATGGACAAAATGGATTCAGCATACTTGTCTTCTTTAAAAGCACCAGTTTATCGGGAGGTTATATGA___AATCTGAGTCTCCTGGTTCATGCTTGTGTTCGAATCCATGGACATGGAAATCAGAAAAGTTAGCCCATGCAAAAAAAATAAGAGATTCACTGATACATCAATG

Fln Alignment:

sp_v1.1_unigene10333___MAYKGELMVKDELLLQGFKMCKALGAIALVHAENGEAIAEGQSRMIELGITGPEGHALSRPSMLEGEATARAIRLAQFVNTPLYVVHVMSIDALDEIVRARQSGLRVIGEPIVASLVLDGSKLWDPDFRIASKYVMSPPIRESGHNKALQAALSTGLLQLVGTDHCPFNSTQKAAGINDFRKIPNGVNGIEERMHLIWDVMVNSGQISVMDYVRITSTTCAQIFNIYPRKGAILPNSDADIIILNPNATFQISAKSHHSKIDTNVYEGWEGKGKVEVTISRGKVVWEHDKLMVEPGSGRYISMPPFGYLFHGMDKMDSAYLSSLKAPVYR
B8LLK4_______________MAYKGELMVKDELLLQGFKMCKALGALAQVHAENGEAVAEGQSRMIELGITGPEGHTLSRPSMLEGEATARAIRLAQFVNTPLYVVHVMSIDALDEIVRARQSGQRVIGEPIVASLVLDDSKIWDPDFTIAAKYVMSPPIRASGHNKALQAALSTGLLQLVGTDHCPFNSTQKEAGIIDFRKIPNGVNGIEERMHLIWDVMVNSGQISVMDYVRITSTACAHIFNIYPRKGAILPNSDADIIILNPNATFQISAKSHHSKIDTNVYEGWEGKGKVEVTISRGKVVWEHDRLMIERGSGRYISMPPFGYLFDGMDKIDSAYLSSLKAPVYR

SNPs (tot: 5)

Position	A %	C %	G %	T %	Probability
165		16		83	0.994512
351	25	75			0.996473
378			25	75	0.996473
402		25		75	0.996473
432	16		83		0.994512

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain