SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene10327

Length: 996 nt

Origin of reads: Biogeco_1 Biogeco_2 Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene10327

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Zinc finger family protein (Fragment) n=1 Tax=Picea abies RepID=Q3ZDI5_PICAB	-	-	1.0e-34	90%
FL-Next	tr=Predicted protein; Physcomitrella patens subsp. patens (Moss).	-	-	0.0	50%
Blast2go	zinc finger family protein	-	-	2.1431e-34	60%

Source	GOs	Term	Type	e value	Identity
Blast2go	zinc ion binding	GO:0008270	Molecular Function	2.1431e-34	60%
Blast2go	protein binding	GO:0005515	Molecular Function	2.1431e-34	60%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Zinc finger, RING-type	IPR001841	-	2.1431e-34	60%
Blast2go	Zinc finger, RING/FYVE/PHD-type	IPR013083	-	2.1431e-34	60%
Blast2go	Zinc finger, C3HC4 RING-type	IPR018957	-	2.1431e-34	60%

Full-Lengther Next Prediction

SNPs (tot: 4)

Position	A %	C %	T %	Probability
457		80	20	0.995493
463	40		60	1.0
592		60	40	1.0
598		80	20	0.995493

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain