SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene10310

Length: 2693 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

>sp_v1.1_unigene10310
CCCTTTATCTTTCTTGAATCGGGATATGGATCATATTAACATACTATGTCGTAGATTTCGCTCCATCAGCCAGCAGGTTCGTCGTGACCTTGGCTGTCACTCATTCTGGGCACATCAGATGTCCTTGTCACTTTTCCGTTTCATTGCATCAGTGGGCAGAACGCTGGTTGTTTCAAACACATTTGGGTCCTTTGCTCTGCTGCTAATTTTTGTCTTAGGAGGATTTGTCATTTCTAAAGATGCTGTCCGTCCATGGTGGATTTGGGGATACTGGGCTTCTCCTATGATGTATGGCCAGAATGCTATAGCCATCAATGAATATCTAGACAAGCGTTGGAGCCTGCCCAACAATGATCCCAACATAGATGAACCAACCATTGGGAAAGCAATTTTGAGAAGCAAAGGCATGTTCACCCGTGGGTATTGGTACTGGATCAGTATTGGAGCTCTGGTTGCGTTTTCGCTGCTTTTCAACATTCTATTCACACTGGCTCTGAAGTATCTAAATCCTCTTGGGAAACCTCAGGCTATTATTTCTGAGGAGGTTCTTGAAGAAAAACATGTTAATCGCACTGGAGAGGTGTTATATTCCAAGAGAAAGAGGAAAAACAAGATTCCAGGATTCTCATCGTCTCATCCCGTGAAGGCCTCAATCGAAGCCAGTAATATGTCTGCCAACAGAGGGATGATATTGCCATTCCAGCCTCTATCACTTGTATTCAACCATATAAATTATTATGTGGACATGCCAGTGGAAATGAAGAGGCAAGGCGTTCCAGAAGATAGGCTTCAATTGTTAAGGGATGTCAGTGGCGCCTTCAGACCTGGCGTCCTGACGGCCTTAGTCGGTGTTAGTGGTGCTGGAAAAACCACTTTAATGGATGTTCTTGCAGGAAGAAAAACTGGAGGTTGCATTGAAGGAACCATCAATATATCTGGTTATCCCAAGAAACAGGAAACCTTTGCTCGTGTATCGGGCTATTGTGAGCAGAACGATATCCATTCTCCTTTTGTGACAGTTTATGAATCTCTCATCTATTCTGCATGGCTACGCCTGCCTTCAGAGGTTGATACCAAAACACGAGAGATGTTTGTGGAAGAAGTGATGGAACTTGTCGAACTGGCACCTCTAAGACAAGCTCTTGTGGGTCTTCCTGGAATAGATGGCCTTTCAACTGAACAGCGTAAAAGACTTACAATAGCTGTTGAATTGGTTGCAAACCCATCAATTATCTTCATGGATGAACCCACATCAGGACTCGATGCCCGAGCTGCAGCTATTGTCATGAGAACTGTACGGAATACTGTTGATACTGGGCGCACTGTTGTCTGCACGATTCACCAACCTAGCATTGATATCTTTGAGGCATTTGATGAGCTCTTACTAATGAAAAGGGGAGGACAAGTCATATATGCAGGACCAGTTGGGCATCATTCTTACAAGCTAATTGAGTACTTTGAGGCTATCCCAGGAGTGCCCAAAATCAGAGATGGTTACAATCCAGCAACCTGGATGCTAGAAGTTAGTTCTCCAGCTGCTGAAACTAATCTTGGCATAGACTTCGCAGAAGTGTACTCAAATTCCCCTCTTTTCCAGCGGAACCAGGCACTTATCAAAGAGCTGAGTACACCAGTACCTGGCTCCAGGGACCTCTACTTCCCTACCAAATACTCTCAGAGTTTCCGTGTCCAATGCATAGCTTGCTTGTGGAAGCAGCACTGGTCTTACTGGAGGAACCCAACATACAATGTTGTTCGATTTTTTTTCACGACTGTGACAGCCCTGCTGTTTGGAAGTATATTCTGGGGACTAGGCAGCAAAACGCGCAAACAACAAGATTTGTTCAATGTCCTAGGTGCTATGTATGCCTCAACAATTTTCCTTGGGGTCAGCAATTCTTCAACTGTGCAACCAGTTGTGGGAGTTCAGCGAACTGTGTTCTATCGAGAAAAGGCAGCTGGGATGTACTCAGCTATTCCTTATGCAGTTGCTCAGGCTGCCATTGAGATTCCATATATACTAATCCAAACCATGATTTACTCTCTCATCGTCTATTCAATGATCGGCTTCCAATGGACAACAGTCAAATTTTTCTGGTTTATATTCTACATGTTCATGTGCTTTGTGTATTTTACCCTGTATGGGATGATTGCTGTTGCTCTGACACCTGGTCACCAGATTGCTGCCATTGTTTCCTCGTTCTTCTATGGATTCTGGAATATCTTCTCTGGATTTCTCATCACTCGGCCTCAAATTCCTTTGTGGTGGAGGTGGTATTACTGGGCCAATCCTATTGCATGGACACTATATGGCCTCATTACTTCTCAACTTGGAGATTTGACTGGTTTTGTAGAAGTTGCTGGTGAAAAAGATACCATGTCTGTGCAACAATTTTTGGAACACTCTTTTGGATATAGACATGATTTTCTGGGTGTGGTAGCTGCGATGCATGTAGGGATAGTCCTCCTCTTTTTCTCTGTGTTTGCCTTTGGGATCAAATATCTCAATTTCCAGAGGCGATGAGATGGTTGTAATCATTTATCTTCAAGCACACAATATGGAGGAATTTGAGGGAAACTGAAGAAGTTGAACACGAGTTCCTAGTAAATCTTCGTTTTCTCTGCTTCTCTAGATATGGCCCCTTTTCGCAATTGTCATCCTTACTGTAACAAAATGGATCAATTTGAATGTC

Ace file of the UniGene sp_v1.1_unigene10310

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	PDR11; PDR11 (PLEIOTROPIC DRUG RESISTANCE 11); ATPase, coupled to transmembrane movement of substances	-	-	64%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	96%
Blast2go	atpdr6 pdr6	-	-	80%

Source	GOs	Term	Type	Identity
Blast2go	auxin biosynthetic process	GO:0009851	Biological Process	80%
Blast2go	drug transmembrane transport	GO:0006855	Biological Process	80%
Blast2go	ATPase activity, coupled to transmembrane movement of substances	GO:0042626	Molecular Function	80%
Blast2go	ATP binding	GO:0005524	Molecular Function	80%
Blast2go	plasma membrane	GO:0005886	Cellular Component	80%
Blast2go	integral to membrane	GO:0016021	Cellular Component	80%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: D5ACV1

Fln msg: your sequence is longer than subject: 833 - 412

Fln protein: MDHINILCRRFRSISQQVRRDLGCHSFWAHQMSLSLFRFIASVGRTLVVSNTFGSFALLLIFVLGGFVISKDAVRPWWIWGYWASPMMYGQNAIAINEYLDKRWSLPNNDPNIDEPTIGKAILRSKGMFTRGYWYWISIGALVAFSLLFNILFTLALKYLNPLGKPQAIISEEVLEEKHVNRTGEVLYSKRKRKNKIPGFSSSHPVKASIEASNMSANRGMILPFQPLSLVFNHINYYVDMPVEMKRQGVPEDRLQLLRDVSGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGCIEGTINISGYPKKQETFARVSGYCEQNDIHSPFVTVYESLIYSAWLRLPSEVDTKTREMFVEEVMELVELAPLRQALVGLPGIDGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLMKRGGQVIYAGPVGHHSYKLIEYFEAIPGVPKIRDGYNPATWMLEVSSPAAETNLGIDFAEVYSNSPLFQRNQALIKELSTPVPGSRDLYFPTKYSQSFRVQCIACLWKQHWSYWRNPTYNVVRFFFTTVTALLFGSIFWGLGSKTRKQQDLFNVLGAMYASTIFLGVSNSSTVQPVVGVQRTVFYREKAAGMYSAIPYAVAQAAIEIPYILIQTMIYSLIVYSMIGFQWTTVKFFWFIFYMFMCFVYFTLYGMIAVALTPGHQIAAIVSSFFYGFWNIFSGFLITRPQIPLWWRWYYWANPIAWTLYGLITSQLGDLTGFVEVAGEKDTMSVQQFLEHSFGYRHDFLGVVAAMHVGIVLLFFSVFAFGIKYLNFQRR*

Protein Length: 834

Fln nts: CCCTTTATCTTTCTTGAATCGGGAT_-_ATGGATCATATTAACATACTATGTCGTAGATTTCGCTCCATCAGCCAGCAGGTTCGTCGTGACCTTGGCTGTCACTCATTCTGGGCACATCAGATGTCCTTGTCACTTTTCCGTTTCATTGCATCAGTGGGCAGAACGCTGGTTGTTTCAAACACATTTGGGTCCTTTGCTCTGCTGCTAATTTTTGTCTTAGGAGGATTTGTCATTTCTAAAGATGCTGTCCGTCCATGGTGGATTTGGGGATACTGGGCTTCTCCTATGATGTATGGCCAGAATGCTATAGCCATCAATGAATATCTAGACAAGCGTTGGAGCCTGCCCAACAATGATCCCAACATAGATGAACCAACCATTGGGAAAGCAATTTTGAGAAGCAAAGGCATGTTCACCCGTGGGTATTGGTACTGGATCAGTATTGGAGCTCTGGTTGCGTTTTCGCTGCTTTTCAACATTCTATTCACACTGGCTCTGAAGTATCTAAATCCTCTTGGGAAACCTCAGGCTATTATTTCTGAGGAGGTTCTTGAAGAAAAACATGTTAATCGCACTGGAGAGGTGTTATATTCCAAGAGAAAGAGGAAAAACAAGATTCCAGGATTCTCATCGTCTCATCCCGTGAAGGCCTCAATCGAAGCCAGTAATATGTCTGCCAACAGAGGGATGATATTGCCATTCCAGCCTCTATCACTTGTATTCAACCATATAAATTATTATGTGGACATGCCAGTGGAAATGAAGAGGCAAGGCGTTCCAGAAGATAGGCTTCAATTGTTAAGGGATGTCAGTGGCGCCTTCAGACCTGGCGTCCTGACGGCCTTAGTCGGTGTTAGTGGTGCTGGAAAAACCACTTTAATGGATGTTCTTGCAGGAAGAAAAACTGGAGGTTGCATTGAAGGAACCATCAATATATCTGGTTATCCCAAGAAACAGGAAACCTTTGCTCGTGTATCGGGCTATTGTGAGCAGAACGATATCCATTCTCCTTTTGTGACAGTTTATGAATCTCTCATCTATTCTGCATGGCTACGCCTGCCTTCAGAGGTTGATACCAAAACACGAGAGATGTTTGTGGAAGAAGTGATGGAACTTGTCGAACTGGCACCTCTAAGACAAGCTCTTGTGGGTCTTCCTGGAATAGATGGCCTTTCAACTGAACAGCGTAAAAGACTTACAATAGCTGTTGAATTGGTTGCAAACCCATCAATTATCTTCATGGATGAACCCACATCAGGACTCGATGCCCGAGCTGCAGCTATTGTCATGAGAACTGTACGGAATACTGTTGATACTGGGCGCACTGTTGTCTGCACGATTCACCAACCTAGCATTGATATCTTTGAGGCATTTGATGAGCTCTTACTAATGAAAAGGGGAGGACAAGTCATATATGCAGGACCAGTTGGGCATCATTCTTACAAGCTAATTGAGTACTTTGAGGCTATCCCAGGAGTGCCCAAAATCAGAGATGGTTACAATCCAGCAACCTGGATGCTAGAAGTTAGTTCTCCAGCTGCTGAAACTAATCTTGGCATAGACTTCGCAGAAGTGTACTCAAATTCCCCTCTTTTCCAGCGGAACCAGGCACTTATCAAAGAGCTGAGTACACCAGTACCTGGCTCCAGGGACCTCTACTTCCCTACCAAATACTCTCAGAGTTTCCGTGTCCAATGCATAGCTTGCTTGTGGAAGCAGCACTGGTCTTACTGGAGGAACCCAACATACAATGTTGTTCGATTTTTTTTCACGACTGTGACAGCCCTGCTGTTTGGAAGTATATTCTGGGGACTAGGCAGCAAAACGCGCAAACAACAAGATTTGTTCAATGTCCTAGGTGCTATGTATGCCTCAACAATTTTCCTTGGGGTCAGCAATTCTTCAACTGTGCAACCAGTTGTGGGAGTTCAGCGAACTGTGTTCTATCGAGAAAAGGCAGCTGGGATGTACTCAGCTATTCCTTATGCAGTTGCTCAGGCTGCCATTGAGATTCCATATATACTAATCCAAACCATGATTTACTCTCTCATCGTCTATTCAATGATCGGCTTCCAATGGACAACAGTCAAATTTTTCTGGTTTATATTCTACATGTTCATGTGCTTTGTGTATTTTACCCTGTATGGGATGATTGCTGTTGCTCTGACACCTGGTCACCAGATTGCTGCCATTGTTTCCTCGTTCTTCTATGGATTCTGGAATATCTTCTCTGGATTTCTCATCACTCGGCCTCAAATTCCTTTGTGGTGGAGGTGGTATTACTGGGCCAATCCTATTGCATGGACACTATATGGCCTCATTACTTCTCAACTTGGAGATTTGACTGGTTTTGTAGAAGTTGCTGGTGAAAAAGATACCATGTCTGTGCAACAATTTTTGGAACACTCTTTTGGATATAGACATGATTTTCTGGGTGTGGTAGCTGCGATGCATGTAGGGATAGTCCTCCTCTTTTTCTCTGTGTTTGCCTTTGGGATCAAATATCTCAATTTCCAGAGGCGATGA___GATGGTTGTAATCATTTATCTTCAAGCACACAATATGGAGGAATTTGAGGGAAACTGAAGAAGTTGAACACGAGTTCCTAGTAAATCTTCGTTTTCTCTGCTTCTCTAGATATGGCCCCTTTTCGCAATTGTCATCCTTACTGTAACAAAATGGATCAATTTGAATGTC

Fln Alignment:

sp_v1.1_unigene10310___MRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLMKRGGQVIYAGPVGHHSYKLIEYFEAIPGVPKIRDGYNPATWMLEVSSPAAETNLGIDFAEVYSNSPLFQRNQALIKELSTPVPGSRDLYFPTKYSQSFRVQCIACLWKQHWSYWRNPTYNVVRFFFTTVTALLFGSIFWGLGSKTRKQQDLFNVLGAMYASTIFLGVSNSSTVQPVVGVQRTVFYREKAAGMYSAIPYAVAQAAIEIPYILIQTMIYSLIVYSMIGFQWTTVKXXXXXXXXXXXXVYFTLYGMIAVALTPGHQIAAIVSSFFYGFWNIFSGFLITRPQIPLWWRWYYWANPIAWTLYGLITSQLGDLTGFVEVAGEKDTMSVQQFLEHSFGYRHDFLGVVAAMHVGIVLLFFSVFAFGIKYLNFQRR
D5ACV1_______________MRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLMKRGGQVIYAGPVGHHSYKLIEYFEAIPGVPKIRDGYNPATWMLEISSPAAETHLGVDFAEVYSNSPLFQRNQALIKELSTPVPGSRDLYFPTKYSQSFRVQCIACLWKQHWSYWRNPTYNVVRFFFTTVTALLFGSIFWGLGSKTYKQQDLFNVLGAMYASTIFLGVSNSSTVQPVVGVQRTVFYREKAAGMYSAIPYAVAQTAIEIPYILIQTTIYSLIVYSMIDFQWTTVKFFWFLFYMFMCFVYFTLYGMMAVALTPGHQIAAIVSSFFYGFWNIFSGFLITRPQIPVWWRWYYWANPVAWTLYGLITSQLGDLTGFVEVAGEKDTMSVQQFLEGYFGYRHDFLGVVAAVHVGIVILFFSVFAFGIKYLNFQRR

SNPs (tot: 38)

Position	A %	C %	G %	T %	Probability
465		45	54		1.0
807	33			66	0.997452
817	33		66		0.997452
1321	16		83		0.994512
1356	85		14		0.993533
1358		14		85	0.993533
1360	85			14	0.993533
1361			14	85	0.993533
1363		14		85	0.993533
1367			14	85	0.993533
1369	85	14			0.993533
1370			85	14	0.993533
1409	81	18			0.999994
2209			20	80	0.999996
2215	90	10			0.90298
2216		10		90	0.90298
2254		86		13	0.999973
2260		80	13	6	0.999961
2261	80		6	13	0.999961
2262	80	13	6		0.999961
2264		13		86	0.999973
2267	13	86			0.999973
2307	89		10		0.999919
2313	89	10			0.999919
2314		89		10	0.999919
2316	89		10		0.999919
2317			10	89	0.999919
2318	89	10			0.999919
2321			89	10	0.999919
2651		80		20	0.995493
2654		20		80	0.995493
2655			20	80	0.995493
2659		75		25	0.996473
2660	75		25		0.996473
2662			25	75	0.996473
2665	25			75	0.996473
2668			25	25	0.995533
2669			25	75	0.996473

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain