SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene10306

Length: 1182 nt

Origin of reads: Uma

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v1.1_unigene10306 (antisense)

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	DUF936 domain containing protein	-	-	0.0	36%
FL-Next	tr=Putative uncharacterized protein; Selaginella moellendorffii (Spikemoss).	-	-	0.0	36%
Blast2go	protein	-	-	2.34956e-41	74%

Source	GOs	Term	Type	e value	Identity
Blast2go	iron ion binding	GO:0005506	Molecular Function	2.34956e-41	74%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Protein of unknown function DUF936, plant	IPR010341	-	2.34956e-41	74%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: tr_plants

Fln subject: D8SI13

Fln msg: Distance to subject end: 98 aas, your sequence is shorter than subject: 393 - 528

Fln protein: DIVPADLDGDELWPKHGFYVKVSDSSHATYVSLKDEDVDLVLSNKLQLGQFVYVDRLEPGSPVPVLRGVRPLQGRHPFIGSPQDLIAVHENEKQVAVPNSGPKPIEKGLQRRGLWASEVAAKKLSVRSLSSSCCDAVSSSKDYLRSLSLSRVGRSSVVRTSVSGLFRANSKVLRNSNGEDVKGREISNVSQSAPENNSAIHARPCLGPNERSGRNNDVSDHNGNMAGEGFSTILPEKLAALGKEALQRRDEAYLDALEALQVASATETMAQIVRNLSELCSSAKPEAPETSIESFMDLHGRVSKFVVDMESWTKGMPIDRGEASDVKEKVSDYSGMWASAAAWIETALSSDMKNCPVNPELKHHTAAEESTLRRVKSCLGRASEDANKGSLGG

Protein Length: 394

Fln nts: CGATATCGTTCCCGCCGATCTTGACGGAGACGAGCTGTGGCCGAAGCACGGTTTTTATGTCAAGGTCTCGGATTCCTCGCATGCTACCTATGTTTCTCTCAAAGACGAAGATGTCGACCTGGTGTTGAGTAACAAGCTTCAGCTCGGCCAATTCGTGTACGTCGACAGGCTCGAACCCGGGTCCCCTGTCCCGGTCTTGCGCGGCGTCAGGCCTCTGCAAGGCAGGCACCCGTTCATCGGGAGTCCCCAGGATTTGATCGCCGTTCACGAGAATGAAAAACAGGTTGCGGTGCCGAATTCGGGACCTAAACCGATCGAGAAGGGCTTGCAGAGGCGCGGCCTGTGGGCGTCCGAGGTAGCTGCCAAGAAGTTGTCGGTTCGATCGCTGTCGTCGTCGTGTTGTGATGCTGTCAGTTCGAGCAAGGATTATCTGAGGTCTCTGTCGTTGTCCAGGGTCGGCAGGAGCTCTGTGGTTAGGACTTCTGTCAGCGGGCTCTTCAGAGCGAATTCGAAGGTTTTGAGAAACAGCAATGGTGAAGATGTTAAGGGCCGGGAAATATCTAATGTTTCGCAATCTGCTCCTGAAAATAATTCTGCAATTCATGCAAGACCATGCCTCGGACCTAATGAGAGATCAGGACGGAACAATGATGTTTCTGATCACAATGGAAACATGGCTGGGGAGGGTTTCAGCACAATTTTGCCGGAGAAGCTAGCAGCCCTGGGAAAGGAAGCTTTGCAGAGGCGGGACGAAGCTTACCTGGATGCATTGGAAGCATTGCAGGTAGCCTCTGCGACGGAAACAATGGCTCAGATTGTGAGGAACCTTTCTGAACTCTGTTCTTCAGCAAAACCCGAAGCTCCTGAAACTTCTATAGAAAGTTTCATGGATTTACACGGGCGGGTATCTAAGTTCGTTGTCGATATGGAATCGTGGACTAAAGGTATGCCTATTGATAGAGGCGAGGCTTCAGATGTCAAAGAAAAAGTGTCGGACTACTCAGGGATGTGGGCTTCTGCTGCGGCATGGATAGAAACAGCTTTATCAAGTGATATGAAGAATTGCCCTGTTAACCCTGAGTTAAAACACCATACAGCTGCGGAAGAATCAACATTGAGAAGGGTGAAAAGCTGTCTGGGTAGGGCATCTGAAGATGCTAACAAAGGCTCATTAGGAGGTCT

Fln Alignment:

sp_v1.1_unigene10306___IVPADLDGDELWPKHGFYVKVSDSSHATYVSLKDEDVDLVLSNKLQLGQFVYVDRLEPGSPVPVLRGVRPLQGRHPFIGSPQDLIAVHENEKQVAVPN--SGP-------KPIEKGLQRRGL-----WASEVAAKKLSVRXXXXXXXXXXXXSKDYXXXXXXXXXXXXXXXXXXXXXLFRANSKVLRNSNGEDVKGREISNVSQSAPENNSAIHARPCLGPNE-------RSGRNNDVSDHNGNMAGEGFSTILPEKLAALGKEALQRRDEAYLDALEALQVASATETMAQIVRNLSELCSSAKPEAPETSIESFMDLHGRVSKFVVDMESW--TKGMPIDRGEASDV
D8SI13_______________IVPA-LAGGELWPNHGFYLKVSDSSHATYVSLAEEHDDLILSDKLQLGQFIHVDRLEYGSPVPLLKGVRALPGRHQCVGTPEDLVA-------TVIPNVKSGPANLVPTVDAIENAMNRNAKKKFDPFSAESVAAKFAERAVMDNPG---------SKHLSRVGTADSLSKSLDRDGFLKSNDRLSRSVSSKD----RTQTDGVSTPRKGNRVAAKSGQSTREPEPVQKSQPGESNIIINSKKWTDGSVSWDSLPANLAELGKEAVRRRDAASAAASEALQEASVAECVIRSISMFAELCSTSKPQLPQPSVEQFFDFHQRLGQAFTTAQALAVTKKTETDQNEDSTV

SNPs (tot: 7)

Position	A %	C %	G %	T %	Probability
628	25			75	0.996473
629		25		75	0.996473
725			83	16	0.994512
801	12	87			0.992554
804	16			83	0.994512
806	16		83		0.994512
846	75		25		0.996473

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain