SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene10221

Length: 1911 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene10221

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	geranylgeranyl transferase type II beta subunit, putative (EC:2.5.1.60); K05956 geranylgeranyl transferase type-2 subunit beta [EC:2.5.1.60]	-	-	8.99999e-40	59%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	85%
Blast2go	protein	-	-	0.0	84%

Source	ECs	Term	Type	e value	Identity
Blast2go		EC:2.5.1.6-	-	0.0	84%
Blast2go	Protein-synthesizing GTPase.	EC:3.6.5.3	-	0.0	84%

Source	ECs	Term	Type	e value	Identity
AutoFact		EC:2.5.1.6-	-	8.99999e-40	59%

Source	GOs	Term	Type	Identity
Blast2go	translation	GO:0006412	Biological Process	84%
Blast2go	Rab geranylgeranyltransferase activity	GO:0004663	Molecular Function	84%
Blast2go	structural constituent of ribosome	GO:0003735	Molecular Function	84%
Blast2go	ribosome	GO:0005840	Cellular Component	84%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Ribosomal protein L29	IPR001854	-	0.0	84%

Full-Lengther Next Prediction

Fln status: Putative Complete

Fln database: coniferopsida.fasta

Fln subject: A9NVH2

Fln msg: query STOP codon too far from subject stop. Distance to subject end: 171 aas, putative chimeric sequence, your sequence is shorter than subject: 148 - 318

Fln protein: MGELEIEKHTQFITSVEKKKDFDSMVMEHLRMSGAYWGLTALDLMGKLDAVNQKEVVSWVLQCQHDCGGFSGNVGHDPHILYTLSAVQILALLDKLDAIDADKISAYIVGLQQEDGSFAGDEWGERKTQEPSRTADCRKNLNRNGQD*

Protein Length: 149

Fln nts: ATGGGGGTTGTGATCGTCTTCTTATTCCACAGCACATTTCAGCTTCGTCGTCCTCGGCAAGCAACATTTCGAACAACTCACTCACTACATTTCTCACAATTCAGCGAAATTTCTCACGCCTTACTACATTTCTCACAATTCAGTGAAATTTCTCACGCCTTACTACATTTCTTGTTTCTTACGTTTCGGCGAGGGCTTGGCTCGGGCTTCGGATCCAGCTTCTTCGGAGGAGGCACGGGGTTTTAGAGACCTGTCACAGCATTCACAGCATTTGGGGGCCTCGTGGATCAATGTAGAGACCCGTCCATTGATCGTTGCACCATCTACCCGTTTAGCTATCGGCGTACTTTTTACCACCTGCGTATTAATCCATCGATTGCCGATAACCTGACCCCTCCCCAGCCAATGATTTGCCCACCACCGTATTGCTGATCGCTCGCCGTACAGACCCCAACAGGAATATCGCAGTCACCTCCTGCACCGAAAACCAAACCATACCACACCTTTTGCCTAGCAGCGGTGGAACTGGTACTTTCGCTGGAGTGTGGGATCTATCACAGAAGGGGAACCGGGTCAGTTCCGTTCTCAAACAGATCGAAGCCAGAATTAGGCCTGCGGCCAACTCAGGAAGATAATCATCTGAGACAGAGAGTTATCTCAATCCGCAGGGCTTCCAACTTCACTGTCCCGCTTCCAAAATCACGAAAGTCACGCTTGGTCAACTTCACTGTGGCACCAAGAATGATCTGAAGCAGTGATGTCTCGACCCAGGGTAATTGCATAAAGGCAGAAGCTGTATATACCGGCCTGAGGTCCCTGAGGACTGCGAATCATATAGACAGGTCTCCATCGCATCTCGGTTGCAGACTTGGAACAAAGAACAAGAAATACGGAAAGAACAAGATATTCGGATCTGTGGCAGTAATCGGACCTCACTGGAACAGTACATACCATCACAGTTAGCCAAGAACATCAAACAA_-_ATGGGTGAATTGGAAATAGAGAAGCATACCCAGTTCATAACGTCTGTTGAAAAGAAAAAGGATTTTGATTCAATGGTAATGGAGCACTTGAGAATGAGTGGGGCATACTGGGGACTGACAGCACTGGATCTCATGGGGAAGCTGGATGCTGTGAATCAAAAGGAAGTTGTTTCTTGGGTCTTGCAATGCCAGCATGATTGTGGTGGATTCAGTGGAAATGTTGGCCATGATCCTCATATTCTGTATACCTTGAGTGCTGTCCAAATATTGGCCCTGCTTGACAAGTTAGACGCCATTGATGCAGACAAGATATCAGCTTATATTGTGGGATTACAGCAGGAAGATGGATCTTTTGCAGGCGATGAATGGGGGGAGAGGAAAACACAGGAGCCAAGCCGCACAGCAGACTGCCGAAAAAATTTGAATCGAAATGGCCAGGATTAA___GGTTCATGAGCTCCGCAACAAGAGCAAATCAGAGCTGTTAAGCCAGCTCAAGGAGCTCAAGGCTGAGCTTGCCTTGCTCAGAGTTGCAAAGGTCACTGGAGGAGCGCCCAACAAACTCTCTAAAATCAAGGTCGTGAGGCTATCAATAGCTCAGGTTCTGACTGTGATTTCTCAGAGCCAGCGATCTGCATTAAGAGAAGCATACAAGAAAAAGAAGTACCTGCCTCTTGATTTGCGTCCCAAGAAGACTCGTGCTATCAGGCGACGCCTTACCAAGCATCAGGCATCATTGAAGACTGAGAGACAGCCTTATGTATTCTCTATGCTTTCTCCTCCTGAAGATTCAGCAAAGGGAGACCTTGAATCTGCATCCACAGGAGTGAAAAATAGGCTTGACAATCCAGGCAGTGCAAAGTTTCCATTGCTGGCATCAGAAGAGTTGCTTTCTGATTCTTCATCAACATCAGTGGATTGGCGTTCAAAGGCA

Fln Alignment:

sp_v1.1_unigene10221___MGELEIEKHTQFITSVEKKKDFDSMVMEHLRMSGAYWGLTALDLMGKLDAVNQKEVVSWVLQCQHDCGGFSGNVGHDPHILYTLSAVQXXXXXXXXXXXXXXXXSAYIVGLQQEDGSFAGDEWGERKTQEPSRTADCRKNLNR
A9NVH2_______________MGELEIEKHTQFITSIEKKKDFDSMVMEHLRMSGAYWGLTALDLMGKLDAVDREEVVSWVLQCQHDRGGFSGNIGHDPHILYTLSAVQILALLDKLDAIDADKISAYIEGLQQEDGSFAGDEWGEIDTRFSYCAVCCLSILRR

SNPs (tot: 65)

Position	A %	C %	G %	T %	Probability
198		66		33	0.997452
274	25			75	0.996473
276			25	75	0.996473
298	75		25		0.996473
300	75			25	0.996473
305		25		75	0.996473
391		80	20		0.995493
394	80			20	0.995493
395		80	20		0.995493
396	20	80			0.995493
400		80		20	0.995493
401		80	20		0.995493
402		80	20		0.995493
404	80			20	0.995493
406		80		20	0.995493
409	80	20			0.995493
411		20	80		0.995493
441		20	80		0.995493
472		30		70	1.0
588		83		16	0.999991
654	88		11		0.923564
731	25	75			1.0
810		75	25		0.996473
963	20		80		0.995493
965			20	80	0.995493
966	80		20		0.995493
1267	87		12		0.992554
1361			20	80	0.995493
1362			20	80	0.995493
1363	20		80		0.995493
1364	80		20		0.995493
1365	20	80			0.995493
1366	80		20		0.995493
1367		60	20		0.99255
1368	20	80			0.995493
1369		80	20		0.995493
1370	20		80		0.995493
1372			20	80	0.995493
1373	20			80	0.995493
1374			20	80	0.995493
1375		20		80	0.995493
1377	80		20		0.995493
1378	20			80	0.995493
1380		80	20		0.995493
1381		20		80	0.995493
1384	20		80		0.995493
1385		80	20		0.995493
1388		20		80	0.995493
1389	80		20		0.995493
1390			20	80	0.995493
1391	20		80		0.995493
1392		20		80	0.995493
1394			80	20	0.995493
1395		80	20		0.995493
1397			20	80	0.995493
1398	20	20	60		0.99255
1399	20		20	60	0.99255
1400	20	80			0.995493
1402	80		20		0.995493
1403	20			80	0.995493
1404	20			80	0.995493
1405			25	75	0.996473
1406	25			75	0.996473
1408	50	50			1.0
1409	75	25			0.996473

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain