SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene10215

Length: 486 nt

Origin of reads: Biogeco_1 Uma

UniGene Fasta

>sp_v1.1_unigene10215
CTGTATTGATGTGTTTGTTGCTGCTGTGAACTTATTACCTTATGCTTTTCCATACACGTTTGTACCTTTTGGAGATGGAAAGTTGAATCCGGACTATGATGGGCTTATGCAACAAGTTGCTTCAAAGAAATTTGATGCAGCAGTGGGTGACATTACGATTGTGACAAATCGTTCGAAGATTGTGGACTTTACGCAGCCTTACATAGAAGCTGGTCTAGCTGTGGTGGCTCCTCTGCAAACAAGAAGTTCGAGTGGCACTTGGGCTTTCCTGCAGCCCTTCACATTACAAATGTGGTGTACTACTGGTGCCTTTTTTCTCGTCATAGGAGCTGTCGTGTGGATTTTGGAGCATAAAACAAACCCCGACTTTCGAGGACATCCAAAGAAGCAGGCCCTGACAGTTCTCTGGTTCAGCTTCTCAACATTGTTTAATGCTCAGAGAGAAAATGTTGTGAGCAACCTTGGACGAGTTGTGCTTATTGTATG

Ace file of the UniGene sp_v1.1_unigene10215

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Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	glutamate-gated kainate-type ion channel receptor subunit GluR5	-	-	63%
FL-Next	sp=Glutamate receptor 3.5; Arabidopsis thaliana (Mouse-ear cress).	-	-	60%
Blast2go	glutamate-gated kainate-type ion channel receptor subunit 5	-	-	79%

Source	GOs	Term	Type	Identity
Blast2go	cellular calcium ion homeostasis	GO:0006874	Biological Process	79%
Blast2go	ion transport	GO:0006811	Biological Process	79%
Blast2go	G-protein coupled receptor signaling pathway	GO:0007186	Biological Process	79%
Blast2go	response to light stimulus	GO:0009416	Biological Process	79%
Blast2go	extracellular-glutamate-gated ion channel activity	GO:0005234	Molecular Function	79%
Blast2go	ionotropic glutamate receptor activity	GO:0004970	Molecular Function	79%
Blast2go	G-protein coupled GABA receptor activity	GO:0004965	Molecular Function	79%
Blast2go	intracellular ligand-gated ion channel activity	GO:0005217	Molecular Function	79%
Blast2go	integral to membrane	GO:0016021	Cellular Component	79%
Blast2go	outer membrane-bounded periplasmic space	GO:0030288	Cellular Component	79%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Ionotropic glutamate receptor	IPR001320	-	0.0	79%
Blast2go	Extracellular solute-binding protein, family 3	IPR001638	-	0.0	79%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: sp_plants

Fln subject: Q9SW97

Fln msg: Distance to subject end: 279 aas, your sequence is shorter than subject: 161 - 953

Fln protein: CIDVFVAAVNLLPYAFPYTFVPFGDGKLNPDYDGLMQQVASKKFDAAVGDITIVTNRSKIVDFTQPYIEAGLAVVAPLQTRSSSGTWAFLQPFTLQMWCTTGAFFLVIGAVVWILEHKTNPDFRGHPKKQALTVLWFSFSTLFNAQRENVVSNLGRVVLIV

Protein Length: 162

Fln nts: CTGTATTGATGTGTTTGTTGCTGCTGTGAACTTATTACCTTATGCTTTTCCATACACGTTTGTACCTTTTGGAGATGGAAAGTTGAATCCGGACTATGATGGGCTTATGCAACAAGTTGCTTCAAAGAAATTTGATGCAGCAGTGGGTGACATTACGATTGTGACAAATCGTTCGAAGATTGTGGACTTTACGCAGCCTTACATAGAAGCTGGTCTAGCTGTGGTGGCTCCTCTGCAAACAAGAAGTTCGAGTGGCACTTGGGCTTTCCTGCAGCCCTTCACATTACAAATGTGGTGTACTACTGGTGCCTTTTTTCTCGTCATAGGAGCTGTCGTGTGGATTTTGGAGCATAAAACAAACCCCGACTTTCGAGGACATCCAAAGAAGCAGGCCCTGACAGTTCTCTGGTTCAGCTTCTCAACATTGTTTAATGCTCAGAGAGAAAATGTTGTGAGCAACCTTGGACGAGTTGTGCTTATTGTATG

Fln Alignment:

sp_v1.1_unigene10215___CIDVFVAAVNLLPYAFPYTFVPFGDGKLNPDYDGLMQQVASKKFDAAVGDITIVTNRSKIVDFTQPYIEAGLAVVAPLQTRSSSGTWAFLQPFTLQMWCTTGAFFLVIGAVVWILEHKTNPDFRGHPKKQALTVLWFSFSTLFNAQRENVVSNLGRVVLIV
Q9SW97_______________CIDIFEAAIQLLPYPVPRTYILYGDGKKNPSYDNLISEVAANIFDVAVGDVTIITNRTKFVDFTQPFIESGLVVVAPVKGAKSS-PWSFLKPFTIEMWAVTGALFLFVGAVIWILEHRFNEEFRGPPRRQIITVFWFSFSTMFFSHRENTVSTLGRFVLLV

SNPs (tot: 6)

Position	A %	C %	G %	T %	Probability
56	66		33		0.997452
84		20	80		0.995493
148	25		75		0.996473
169	50		50		1.0
192		42		57	1.0
201		14		85	0.993533

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain