SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene10191

Length: 646 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene10191

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Pupative polyprotein n=1 Tax=Oryza sativa Japonica Group RepID=Q75IL9_ORYSJ	-	-	54%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	57%
Blast2go	retrotransposon ty1-copia subclass	-	-	70%

Source	GOs	Term	Type	Identity
Blast2go	metal ion binding	GO:0046872	Molecular Function	70%
Blast2go	nucleic acid binding	GO:0003676	Molecular Function	70%
Blast2go	cytoplasmic membrane-bounded vesicle	GO:0016023	Cellular Component	70%

Full-Lengther Next Prediction

SNPs (tot: 74)

Position	A %	C %	G %	T %	Probability
159	40		60		1.0
165	80		20		0.995493
181		80		20	0.995493
192		80		20	0.995493
193	20		80		0.995493
194	40		60		1.0
205		60		40	1.0
221		20		80	0.995493
222	60			40	1.0
223	20		80		0.995493
233		83		16	0.994512
238		16	83		0.994512
240		80		20	0.995493
251		20		80	0.995493
260	80		20		0.995493
263	80		20		0.995493
267		20		80	0.995493
274	20		80		0.995493
276		20		80	0.995493
296	80			20	0.995493
298	25		75		0.996473
299		75		25	0.996473
302	25		75		0.996473
306		25		75	0.996473
316	33		66		0.997452
322			75	25	0.996473
325		75		25	0.996473
329	75		25		0.996473
330	25		75		0.996473
331	25		75		0.996473
340			75	25	0.996473
341	75	25			0.996473
359		75	25		0.996473
367	14		85		0.993533
378		28		71	1.0
379	85		14		0.993533
381	14	85			0.993533
384		85		14	0.993533
385		71		28	1.0
387	14		85		0.993533
398	14	85			0.993533
399	71	28			1.0
400		85		14	0.993533
403		14	71	14	0.984337
405	71			28	1.0
406	28		71		1.0
410	85			14	0.993533
411	42		57		1.0
412	85		14		0.993533
414		85		14	0.993533
415	14		85		0.993533
417		16	16	66	0.988813
418			16	83	0.994512
443	80	20			0.995493
444	75	25			0.996473
445	75	25			0.996473
446	25	75			0.996473
450		33		66	0.997452
456	33		66		0.997452
473	66			33	0.997452
495	33			66	0.997452
499	33		66		0.997452
501	66			33	0.997452
505			66	33	0.997452
506	33	33		33	0.997753
508	33		66		0.997452
510	33		66		0.997452
529	33		66		0.997452
534		66	33		0.997452
544	66		33		0.997452
546	33		33	33	0.997753
550		66		33	0.997452
552	33	33	33		0.997753
553		33		66	0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain