SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene10190

Length: 1174 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene10190

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Vacuolar ATP synthase subunit G1 n=1 Tax=Jatropha curcas RepID=D6BR50_9ROSI	-	-	9.0e-35	69%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	95%
Blast2go	vacuolar atp synthase subunit g	-	-	0.0	88%

Source	ECs	Term	Type	e value	Identity
Blast2go	Hydrolases, Acting on acid anhydrides, Acting on acid anhydrides; catalyzing transmembrane movement of substances.	EC:3.6.3.-	-	0.0	88%
Blast2go	H(+)-transporting two-sector ATPase.	EC:3.6.3.14	-	0.0	88%

Source	KEGGs	Term	Identity
Blast2go	Oxidative phosphorylation	00190	88%
Blast2go	Photosynthesis	00195	88%
Blast2go	Methane metabolism	00680	88%
Blast2go	Metabolic pathways	01100	88%

Source	GOs	Term	Type	Identity
Blast2go	ATP hydrolysis coupled proton transport	GO:0015991	Biological Process	88%
Blast2go	hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances	GO:0016820	Molecular Function	88%
Blast2go	hydrogen ion transporting ATP synthase activity, rotational mechanism	GO:0046933	Molecular Function	88%
Blast2go	plant-type vacuole	GO:0000325	Cellular Component	88%
Blast2go	vacuolar proton-transporting V-type ATPase complex	GO:0016471	Cellular Component	88%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Vacuolar (H+)-ATPase G subunit	IPR005124	-	0.0	88%

Full-Lengther Next Prediction

SNPs (tot: 30)

Position	A %	C %	G %	T %	Probability
28		66	33		0.997452
29	66		33		0.997452
30	66		33		0.997452
31		66	33		0.997452
110	25			75	0.996473
111		75		25	0.996473
113		75	25		0.996473
114			25	75	0.996473
115			25	75	0.996473
116			25	75	0.996473
266	14			85	0.993533
267			28	71	1.0
269			42	57	1.0
273			14	85	0.993533
578	87			12	1.0
579		87	12		1.0
580		87	12		1.0
581	87	12			1.0
585		7	87		0.999996
587			89	10	1.0
592		10		89	1.0
593	10		89		1.0
597		92		7	1.0
598		92	7		1.0
600	92			7	1.0
857	92		7		0.999602
968	90	10			0.90298
1140	33	66			0.997452
1141		33	66		0.997452
1145		33		66	0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain