SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene10175

Length: 1638 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene10175

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	leucine-rich repeat containing protein, putative	-	-	65%
FL-Next	tr=Putative uncharacterized protein; Vitis vinifera (Grape).	-	-	70%
Blast2go	leucine rich repeat-like protein	-	-	80%

Source	GOs	Term	Type	e value	Identity
Blast2go	protein binding	GO:0005515	Molecular Function	0.0	80%
Blast2go	plasma membrane	GO:0005886	Cellular Component	0.0	80%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: tr_plants

Fln subject: D7SI42

Fln msg:

Fln protein: MGCCMSKSGTARASRVARWRSTGIVGLRDSNLKCLPSEVLELERAVRMLDITHNKLVDIPLEIGSLVNIQRLILSENHLERLPITLGKLQSLKVLAIDDNRLTTLPDELGLLVRLERLSVSHNSLRSLPETIGSLRNLVQLNVSNNHLTFLPESIGSCFSLEELLANGNSIEDLPLSLCRLVNLKSLALSNNNVKQLPQNLLKDCTSLQSILLHDNPISMEQFQQMEGFQEFESRRRRKVDKQIDSNVLMNSGGLDEGVDL*

Protein Length: 263

Fln nts: ATGGTGGTTGGGTTGGCTGTTAGGGGAAGGAATGTCACTTGTAATTTAATTTCTTCATGGAGGCTCGTTGACAGACTCATGGCAGGACGCACCTGGTTCCCATTCTAAGCACCTACGGATGGAAACAAAATCACTCAGAGGCGGCCTGCCGAGGAAATTTGCATAGGTTTTGAACTGAAAAAAGTCACAGATAAGTTCATCCAGAAAGCATTGACTTTCATAGTTCAACGCTGCTGTAATGTGTTTTTGTCATATGGAATAGACATGTGGGTATTGTTGCACATATGAGAATTCTACTTTGGTTTCGGTGTATTGAGGGTCCTATAAGCCTCTTTTGGTCATGTCACCCTGCCCGTCTAAGGTCCATTTTCTGAGATGTACGAATTGGCTGCAATCGTGATATTTGTATTGTGGGTCTAGGATTTTATTTATTATTTTGGGGGCAGTAACTGCTACAGCATATATTGGATA_-_ATGGGTTGCTGCATGAGCAAAAGCGGCACTGCACGTGCTAGCAGAGTCGCAAGATGGCGGTCCACTGGTATTGTGGGTCTCAGGGATTCCAATTTGAAGTGCTTACCAAGTGAGGTGTTGGAGCTTGAAAGAGCCGTGCGCATGTTGGACATAACTCACAACAAACTCGTTGACATTCCTTTGGAGATTGGAAGCCTTGTGAACATCCAACGTTTGATTTTGTCTGAGAATCACCTAGAACGGCTACCCATAACTTTGGGCAAGCTTCAGTCACTTAAGGTGCTTGCCATTGATGATAATCGACTTACAACCTTACCCGATGAATTAGGATTACTTGTTCGGCTTGAGAGGTTATCTGTATCACATAACTCGCTAAGATCTTTACCAGAGACAATAGGGAGCCTACGCAATCTGGTGCAGCTTAATGTGTCCAACAACCATCTAACGTTCCTCCCAGAGTCCATTGGAAGCTGCTTCTCATTGGAAGAGCTGCTGGCAAATGGTAATTCTATTGAGGATCTGCCATTGTCACTTTGCAGGCTTGTTAACCTCAAGTCTCTTGCATTGAGTAACAACAATGTGAAGCAGCTTCCACAAAATTTGCTCAAAGACTGCACCTCATTACAGAGTATTTTGCTTCATGATAATCCAATTTCCATGGAACAATTTCAGCAGATGGAGGGATTCCAGGAGTTTGAGTCAAGGAGGAGGAGAAAAGTCGACAAGCAGATTGATTCAAATGTATTGATGAACTCAGGTGGCCTTGATGAAGGTGTCGATCTATAA___ACTTAGGGGTAGTAGTGTAGTACCCATGGTAATTTACTGAATTATCATTCCACAATACTGTTTGATGACATAATCTAGCATCTTAGCTTAATTCCTCTGCCCACTGTATATACTATCAGTACGTAAGTATTTTCCTATCTTCATAAACTTGTCCTCTGTATAATGTTAAGGTCTGGCACATTCAAACAAGATAGTGTATTCAAACAAGAATTGATCTGATCTTCCGTCTGGAAAAAGTCTATATTTATCCAGCTTAAGGGCCATATTCATTTTATTGGCCGTGTCATTAAAATCATTATTTTTGCTTATCAATGCCAACCTTTTTTAGTATGATTAATCTGTAATGGATCCAATTTTGTTAATTAATTGTACGTTGCTATG

Fln Alignment:

sp_v1.1_unigene10175___MGCCMSKSGTARASRVARWRSTGIVGLRDSNLKCLPSEVLELERAVRMLDITHNKLVDIPLEIGSLVNIQRLILSENHLERLPITLGKLQSLKVLAIDDNRLTTLPDELGLLVRLERLSVSHNSLRSLPETIGSLRNLVQLNVSNNHLTFLPESIGSCFSLEELLANGNSIEDLPLSLCRLVNLKSLALSNNNVKQLPQNLLKDCTSLQSILLHDNPISXXXXXXXXXXXXXXSRRRRKVDKQIDSNVLMNSGGLDEGVD
D7SI42_______________MGCCLSKNGDSKASRIGRWKSTGIVALRDSKLKAFPDEVLDLDTSVRTLDLTHNRLVDIPMEISKLINMQRLILADNLIERLPMNLGKLQSLKVMTLDGNQVTTLPDELGMLVRLERLSISGNLLTCLPETIGSLRNLLLLNVSNNKLKCLPESVGSCFSLEELQANDNSIEDIPASFCNLIHLKSLCLNNNNINQIPPNLLKDCKALQNISLHDNPISMDQFQQMEGFQAFETRRKKKFDKQIDSNVMISSKGLDEGVD

SNPs (tot: 30)

Position	A %	C %	G %	T %	Probability
299		88	11		0.923564
300			11	88	0.923564
301			11	88	0.923564
302			11	88	0.923564
388		12		87	0.992554
399			57	42	1.0
403	14			85	0.993533
547		16		83	0.994512
784		87	12		0.992554
812	16			83	0.994512
813		83		16	0.994512
848	83			16	0.994512
849	83	16			0.994512
1025		80	20		0.995493
1195	66			33	0.997452
1197	66		33		0.997452
1198	66			33	0.997452
1202		33	66		0.997452
1203	66	33			0.997452
1207	66	33			0.997452
1212	66	33			0.997452
1213	66			33	0.997452
1214		33		66	0.997452
1215	33		66		0.997452
1348	25			75	0.996473
1382	25		75		0.996473
1420			25	75	0.996473
1437	85		14		0.993533
1602	75			25	0.996473
1639		33		66	0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain