SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene10168

Length: 947 nt

Origin of reads: Biogeco_1 Uagpf Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene10168

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	[R] COG5038 Ca2+-dependent lipid-binding protein, contains C2 domain	-	-	8.0e-05	30%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	81%
Blast2go	c2 domain-containing protein	-	-	0.0	77%

Source	InterPros	Term	Type	Identity
Blast2go	C2 calcium-dependent membrane targeting	IPR000008	-	77%
Blast2go	C2 calcium/lipid-binding domain, CaLB	IPR008973	-	77%
Blast2go	C2 membrane targeting protein	IPR018029	-	77%

Full-Lengther Next Prediction

SNPs (tot: 24)

Position	A %	C %	G %	T %	Probability
172		75	25		0.996473
173	25		75		0.996473
198		66	33		0.997452
236	33		66		0.997452
400		66		33	0.997452
457		75	25		1.0
517		83		16	0.994512
547		16	83		0.994512
588	75		25		0.996473
608	25		75		0.996473
609	75		25		0.996473
619		33		66	0.997452
642	75		25		0.996473
645	75	25			0.996473
646	25			75	0.996473
647		75	25		0.996473
650	25		75		0.996473
654	25		75		0.996473
656	25			75	0.996473
659	75	25			0.996473
660	75	25			0.996473
708	93			6	0.999453
761			75	25	1.0
804	84		15		0.999986

SSRs (tot: 1)

Start position	End position	Sequence	Length
919	935	AT AT AT AT AT AT AT AT A	17

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain