SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene10164

Length: 1508 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene10164

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	oxidoreductase, putative	-	-	61%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	67%
Blast2go	oxidoreductase family protein	-	-	77%

Source	GOs	Term	Type	Identity
Blast2go	oxidation-reduction process	GO:0055114	Biological Process	77%
Blast2go	oxidoreductase activity	GO:0016491	Molecular Function	77%
Blast2go	binding	GO:0005488	Molecular Function	77%
Blast2go	plastid	GO:0009536	Cellular Component	77%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Oxidoreductase, N-terminal	IPR000683	-	0.0	77%
Blast2go	NAD(P)-binding domain	IPR016040	-	0.0	77%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: B8LP22

Fln msg: Overlapping hits, possible frame ERROR between 805 and 789,

Fln protein: MAVEMVRFGILGCANIARKNSRAINKSPNSLIYAIGSRSLEKAAAFVSANNLSPEVKLYGSYDEVLDDPSVDAVYIPLPTSLHLEWSLKSAQKKKHILLEKPPALSVQDLDIIIEVCNTNGVQLMDGTMWMHHPRTHKMKQLLGNPDLFGNLNSVHSNFTFPAPADFLQNNIRVKPDMDALGALGDLGWYCIRAILWANDYQMxxxxxxxMPAPTFNAAGVIMSCGATFMWEDGRLATYHVSFLSHATMNLIVQGTRGTLHVEDFCIPFEETKASFKFISDMKPKPLFLGWENRPEEHQVIPEVPQEVAMIEELSRIVKNIRDERGKNEPFWPSIMRKTQVLVNAVMESIHTNFDIAKIA*

Protein Length: 362

Fln nts: CGTCGTGACCTTGGCTGTCATTGGGACTCCCACTTTCTGATGCGTTTGTCACTCCGTTTTCCATACAATAAGCCGAGATCACGCTACCCTTTTCAGCGCTCGTATTTTGAACCCGTAGAAGCTTCGTTCCGATCCGTGGAACCCGTGGAAGCTTCGCTCCGATCCGTGTGACAGTATA_-_ATGGCAGTAGAAATGGTCCGTTTTGGAATACTGGGCTGTGCAAACATAGCCAGAAAGAATTCCAGAGCAATAAATAAGTCACCCAATTCATTAATCTATGCAATTGGGTCCAGATCTCTAGAGAAGGCCGCGGCCTTTGTTTCTGCTAATAATTTGTCTCCAGAAGTGAAATTGTATGGCAGCTATGATGAAGTTCTGGATGATCCATCTGTTGATGCTGTATACATTCCTCTTCCTACCAGTTTACATCTTGAATGGTCTCTCAAGTCTGCCCAGAAAAAGAAACACATCCTTCTTGAGAAGCCCCCTGCCTTGTCTGTACAAGACCTTGACATCATCATTGAGGTCTGCAACACAAATGGTGTTCAACTTATGGATGGCACCATGTGGATGCACCATCCAAGAACCCATAAAATGAAACAACTGCTGGGAAATCCAGACCTATTCGGCAACTTGAATTCGGTCCACAGCAATTTCACATTCCCTGCCCCTGCCGATTTTTTACAAAACAATATACGGGTTAAGCCAGACATGGATGCACTGGGAGCATTGGGTGATTTGGGATGGTATTGCATTAGGGCAATCCTGTGGGCTAATGACTACCAAATGxxxxxxxxxxxxxxxxxxxxxATGCCAGCACCAACATTCAATGCAGCAGGAGTCATAATGAGTTGTGGTGCTACTTTCATGTGGGAGGATGGGCGTTTAGCCACCTACCATGTTTCCTTTCTATCCCATGCAACCATGAATTTGATTGTACAGGGCACCAGAGGGACATTACATGTGGAGGACTTCTGCATTCCATTTGAAGAGACAAAGGCATCTTTCAAATTTATTTCTGACATGAAGCCCAAGCCACTTTTCCTTGGGTGGGAAAATAGGCCAGAGGAGCACCAGGTGATTCCAGAGGTTCCACAGGAAGTTGCCATGATTGAGGAACTGTCAAGAATTGTGAAGAATATAAGAGATGAGAGAGGGAAAAATGAACCATTCTGGCCCTCCATTATGAGGAAAACACAGGTGCTTGTCAATGCTGTTATGGAATCCATTCACACAAACTTTGATATTGCCAAAATTGCTTAA___CTATTTAGCCAACTTTGTAGAATATATATTTCATTTCTAAACAATAAGAAGGCATCATGGAGCCAAAATGTGACCGCACAGGTCATTCATCCCTGTGTAAGATGGGAGCTTAATCTTGTAAAACTTCGATAGCATTGAGCTACAGCTCACAGTATGTGACTGTACAAGTTTCCCATTATGGATTGAGGGTTGTATGTGGAAATGAGTGCACATGTTTTATAATCTATGTATTTTCTTATATAATATCTT

Fln Alignment:

sp_v1.1_unigene10164___AVEMVRFGILGCANIARKNSRAINKSPNSLIYAIGSRSLEKAAAFVSANNLSPEVKLYGSYDEVLDDPSVDAVYIPLPTSLHLEWSLKSAQKKKHILLEKPPALSVQDLDIIIEVCNTNGVQLMDGTMWMHHPRTHKMKQLLGNPDLFGNLNSVHSNFTFPAPADFLQNNIRVKPDMDALGALGDLGWYCIRAILWANDYQMxxxxxxMPAPTFNAAGVIMSCGATFMWEDGRLATYHVSFLSHATMNLIVQGTRGTLHVEDFCIPFEETKASFKFISDMKPKPLFLGWENRPEEHQVIPEVPQEVAMIEELSRIVKNIRDERGKNEPFWPSIMRKTQVLVNAVMESIHTNFDIAKI
B8LP22_______________AVGRVRFGVLGCADIVRKVARAIGMAKGATIHALGSRSLEKAKAFAADNNFPTQTKLYGSYAEVLDDADVDVVYIPLPTTLHLEWAVKAAQKKKHVLLEKPPALTVEDMDKMIESFDRHGVQLMDGTMWVHHPRTARMAELLNNPQLFGNLKEVHSIFSYAASHEFLEKNIRSRPDLDALGAQGDIGWYCCRAILWANDYQMxxxxxxMPAPIFNAAGVIMSCGATFMWEVGRLATYHASFLSHATTNLTVQGTRGTLHVEDFCIPFEETNASFKFISDMKPKPLFLGWENRPDEHKVIAEVPQEVAMIEELSRIVKNIRDGEGKIDPFWPSITRKTQVLVNAVMESIHSNFDIVNI

SNPs (tot: 20)

Position	A %	C %	G %	T %	Probability
82		75		25	0.996473
85	25		75		0.996473
86		75		25	0.996473
87			25	75	0.996473
88	75		25		0.996473
89		75	25		0.996473
90		75	25		0.996473
100	25		75		0.996473
149	50		50		1.0
243		66	33		0.997452
1062	66		33		0.997452
1063			66	33	0.997452
1064		33	66		0.997452
1067	66			33	0.997452
1068		33	66		0.997452
1069	66			33	0.997452
1072	66			33	0.997452
1078	75			25	0.996473
1252		87		12	0.992554
1485		25		75	0.996473

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain