SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene10161

Length: 1136 nt

Origin of reads: Biogeco_1 Uagpf Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene10161

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Unassigned protein	-	-	0.0	-
FL-Next	tr=Putative uncharacterized protein; Vitis vinifera (Grape).	-	-	0.0	42%
Blast2go	unnamed protein product [Vitis vinifera]	-	-	1.64723e-36	57%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: tr_plants

Fln subject: D7T6Z9

Fln msg:

Fln protein: MGDALAELEVKLRSSKVKLTREEENVLRKCKEKAIRDFMIGALITSGITWTVTPRLGLGYRLNATGAAAVVSGNWRFDRALNSCLDNVLSLDGSRLQKELATILLTKHSHNPWRMQLVNKHYYLEKVYDESNLEVPLSRWRHRNLSGDAWSFHRAKDVREGVAMSEKLRGATNPVASGSQVEDILVDPLEFIFGHPKRTESANLDMRDIQQRKHSRRHRRADRRQKISTAAMTTNSKYAE*

Protein Length: 242

Fln nts: ATGGGGTAGTATACCTTGGATGTCTTGACCTTGGCTGTCACTCAGGTTAGAGCT_-_ATGGGGGATGCATTGGCAGAGCTGGAGGTGAAGCTTAGATCAAGCAAGGTTAAGTTGACACGAGAAGAAGAGAATGTTTTGCGAAAATGCAAGGAAAAAGCAATTAGAGATTTTATGATTGGTGCTTTAATCACATCGGGTATAACATGGACAGTTACACCAAGACTAGGATTGGGATATAGACTGAATGCTACTGGAGCTGCAGCTGTAGTAAGTGGAAATTGGAGATTTGACAGGGCCCTTAATTCATGTTTGGATAATGTTCTTTCCTTGGATGGGAGTCGCTTACAAAAGGAGTTGGCAACTATTTTGCTGACCAAGCATAGCCACAATCCTTGGAGAATGCAACTTGTGAATAAACATTACTATCTTGAGAAAGTATATGATGAGTCAAATTTGGAAGTACCACTGTCAAGGTGGCGTCACAGAAATCTGTCAGGTGATGCTTGGTCTTTTCATCGAGCCAAAGATGTAAGAGAGGGTGTGGCCATGTCAGAAAAATTGCGAGGTGCTACCAATCCTGTTGCTTCAGGAAGTCAGGTGGAAGATATTCTTGTAGACCCTCTAGAGTTTATCTTTGGCCATCCGAAAAGAACTGAAAGTGCTAATCTGGACATGCGGGATATCCAACAGAGAAAGCACAGCCGTAGGCATAGAAGGGCAGATCGTAGACAGAAGATATCAACTGCAGCTATGACAACAAACAGCAAATATGCTGAATGA___TTGCCTAAAAGTTGTAATGGAGAATCTGGTTATCTCCTTTCCATATGTTTTCAACCTATGTGTGGTTTCAAAAATTTGGGGTCTAGAGGATTTTTTATTTTTATTGGAAAGTGCACAAAAGTATCATATTGGCTTCTAGAAGATTTGGTTTATAAACCTGGAAACATCTCAAGGGTGTACAAATTATGTACATGTGGTTTGAGCTTTTGCTCTCTAGGAGATTTGAAACTTAAACATATGAAAAGAACTCCAGGGCAGACAAGCTATCTTCTGGAATGCTTGTGGAATTAGAATGGTTTGTAGTTGCTCCAACATTTACTTTTTTATCTATTGTTAAGTACTAGCAAATTTTTTCTCCC

Fln Alignment:

sp_v1.1_unigene10161___DALAELEVKLRSSKVKLTREEENVLRKCKEKAIRDFMIGALITSGITWTVTPRLGLGYRLNATGAAAVVSGNWRFDRALNSCLDNVLSLDGSRLQKELATILLTKHSHNPWRMQLVNKHYYLEKVYDESNLEVPLSRWRHRNLSGDAWSFHR-AKDVREGVAMSEKLRGATNPVASGSQVE-----DILVDPLE
D7T6Z9_______________DALVELEQTLRTKQGGLTPPEVSILLSCRSKAVNSFTTGACVASAFVWATTRRLDKMFRFNLSAGSAVSFGLWRFSRSLDSCLAHIMALDGSRMQKELATIIVNKYQDNPWRMQLISNHFYSEKVFDDSTSDKPKLRWRHRNFFGDSASHNQGTHDDDDHVIDSQNDNHSYKNDLESKQVHVKPGIDMMADPLD

SNPs (tot: 22)

Position	A %	C %	G %	T %	Probability
42	20			80	0.995493
43		80		20	0.995493
47			20	80	0.995493
48			20	80	0.995493
242	83		16		0.994512
246			20	80	0.999996
247	90			10	0.90298
248		90		10	0.90298
249			10	90	0.90298
250			90	10	0.90298
251		18	81		0.999994
446		83		16	0.994512
462	85		14		0.993533
463		85		14	0.993533
464		14		85	0.993533
467		85	14		0.993533
469	85	14			0.993533
470		14	85		0.993533
471			85	14	0.993533
481	85	14			0.993533
482	14		85		0.993533
512	83		16		0.994512

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain