SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene10133

Length: 1070 nt

Origin of reads: Biogeco_1 Uagpf Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene10133

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Os02g0148300 protein (Fragment) n=2 Tax=Oryza sativa Japonica Group RepID=Q0E3Y4_ORYSJ	-	-	2.0e-32	35%
FL-Next	tr=Predicted protein; Hordeum vulgare var. distichum (Two-rowed barley).	-	-	0.0	34%
Blast2go	atp binding	-	-	3.52266e-33	55%

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: tr_plants

Fln subject: F2D9V2

Fln msg: Overlapping hits, possible frame ERROR between 506 and 487, your sequence is shorter than subject: 225 - 624

Fln protein: GTELQELQAWLETMVSKLGVHDRLLEDREAGRTHALVGALENRISAIISESESFQVESKSKDVLLQDTGNKMHELSSKVDLLEASLRDKQAQVESLQRERSSALGAIAAGAEVSEIEEIGQVSKRLVAPHVRSTRKIASDQLTLNIDVEAGQSTSDLKDDDxxxxxxxxLTASRLIPKAMRPITDRIDGVWVSGGRVLMRQPTARLGVIVYWILLHLWMMEMLL*

Protein Length: 226

Fln nts: AAGGAACTGAGCTGCAAGAGCTGCAGGCATGGTTGGAAACAATGGTTTCAAAACTTGGAGTGCATGATAGACTTCTTGAGGATAGAGAAGCTGGGAGAACACATGCACTTGTGGGTGCACTAGAAAATAGAATTTCAGCTATTATCTCTGAATCAGAAAGTTTCCAGGTAGAGTCCAAAAGCAAGGATGTTTTGTTACAAGATACAGGAAATAAGATGCACGAGTTATCAAGTAAGGTGGATCTTCTTGAGGCTTCCCTTCGaGATAAGCAAGCTCAAGTTGAAAGTCTTCAGAGAGAAAGAAGTTCTGCATTAGGAGCTATTGCTGCCGGTGCAGAAGTGTCAGAAATTGAAGAAATTGGGCAAGTAAGCAAGCGTCTTGTTGCACCTCATGTTCGGAGTACACGCAAGATTGCAAGTGATCAACTTACACTTAATATAGATGTGGAAGCTGGCCAGTCAACTTCAGACCTTAAAGACGATGACxxxxxxxxxxxxxxxxxxxxxxxxCTTACAGCATCTAGGCTTATTCCAAAGGCTATGAGACCCATAACAGATCGGATAGATGGTGTTTGGGTCTCTGGTGGGCGAGTGCTAATGAGGCAGCCTACAGCAAGATTAGGTGTTATAGTTTACTGGATTCTACTACATCTTTGGATGATGGAAATGCTGCTATAACAAGAAACTTTGCTTTGGATCATTACGTATTTTTCATTGAAGGTGCTATAACGGCACACTGTTTACACCTCCTTTTTTAACTTCTGTCTTCATATGTGGAAGTATTCGTGGGCATTCTTTTGTACAACCATGATTCTTTAAAGTTCTTATACAAGTTGTAAGACGAGATTTTTTGGCCTCTAGGGCAGCTGTGATGGTTATTTTCTTCGTTAATCCCAGTTAGCCTTGGTTGTATCTAATAAGGAATGATGGTCCATGCGAAGTTCTTTTTGTGGTTCAAGGAACTTCAATTCACAAGTTGTTTATCATAATCTTTTCTACCAAAGTTTTTGTTCCTTTGTTCTTTATTCCTGTTACAACTTATAAAGAGCTCAATGTTAGAGAGACATTTCAGC

Fln Alignment:

sp_v1.1_unigene10133___TELQELQAWLETMVSKLGVHDRLLEDREAGRTHALVGALENRISAIISESESFQVESKSKDVLLQDTGNKMHELSSKVDLLEASLRDKQAQVESLQRERSSALGAIAAGAEVSEIEEIG-QVSKRLVAPHVRSTRKIASDQLTLNIDVEAGQSTSDLKDDDxxxxxxxLTASRLIPKAMRPITDRIDGVWVSGGRVLMRQPTARLGVIVYWI
F2D9V2_______________SQINDFVKWLETALMQFGVHCESTDDHDYTQVPVYMDMLDKKIVSLISESDDLRVAVQSKDSSLQVERTKMEELSRKSEALEASLSQKDSQIGMLRRDRTMGQPRSINLPGTSEIEQMNDKVSPAAVVTQIRGARKVNSDQVAIDVEMHKDKPLDD-EDDDxxxxxxxLTMSRIVPKFTRPISDRIDGMWASGDRLLMRQPTLRLGVLIYWI

SNPs (tot: 5)

Position	A %	C %	G %	T %	Probability
921	88		11		0.923564
930		44		55	1.0
939	22	77			0.999999
964	75			25	1.0
980		50		50	1.0

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain