SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene10130

Length: 666 nt

Origin of reads: Biogeco_1 Biogeco_2 Uma

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v1.1_unigene10130 (antisense)

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	nuclear transcription factor, X-box binding, putative	-	-	60%
FL-Next	sp=NF-X1-type zinc finger protein NFXL1; Arabidopsis thaliana (Mouse-ear cress).	-	-	41%
Blast2go	protein	-	-	71%

Source	GOs	Term	Type	Identity
Blast2go	response to light intensity	GO:0009642	Biological Process	71%
Blast2go	response to salt stress	GO:0009651	Biological Process	71%
Blast2go	defense response to bacterium	GO:0042742	Biological Process	71%
Blast2go	regulation of transcription, DNA-dependent	GO:0006355	Biological Process	71%
Blast2go	response to microbial phytotoxin	GO:0010188	Biological Process	71%
Blast2go	salicylic acid biosynthetic process	GO:0009697	Biological Process	71%
Blast2go	metal ion binding	GO:0046872	Molecular Function	71%
Blast2go	sequence-specific DNA binding transcription factor activity	GO:0003700	Molecular Function	71%
Blast2go	mitochondrion	GO:0005739	Cellular Component	71%
Blast2go	nucleus	GO:0005634	Cellular Component	71%

Full-Lengther Next Prediction

SNPs (tot: 17)

Position	A %	C %	G %	T %	Probability
359		61		38	1.0
402			90	10	0.90298
440	11			88	0.923564
441		88	11		0.923564
444	88		11		0.923564
448			11	88	0.923564
449	88	11			0.923564
450		12		87	0.992554
451	12	87			0.992554
452	12	87			0.992554
453		87	12		0.992554
454			12	25	1.0
456		14		85	0.993533
457	14			85	0.993533
458		14		85	0.993533
460	14			85	0.993533
462		85	14		0.993533

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain