SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene10076

Length: 1865 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene10076

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Per1-like family protein [Solanum tuberosum]	-	-	68%
FL-Next	tr=Putative uncharacterized protein; Vitis vinifera (Grape).	-	-	71%
Blast2go	per1-like family protein	-	-	83%

Source	GOs	Term	Type	Identity
Blast2go	endomembrane system	GO:0012505	Cellular Component	83%
Blast2go	membrane	GO:0016020	Cellular Component	83%
Blast2go	cytoplasmic membrane-bounded vesicle	GO:0016023	Cellular Component	83%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: tr_plants

Fln subject: A5BYH9

Fln msg:

Fln protein: MADRDLPGSMVLVLVLLLSSVVASYASAGDADPLYRSCVENCEKTGCVEKTCFKYCKLPVNGASVEGAWFMQEPLYLRWKEWDCKSDCRYHCMVKREADRESLGQKPVKYHGKWPFKRVFGFQEPVSVAFSVFNLSLQFHGWLSFLILVYYKLPLRPQSRSTYYDFTGLWNIYGILSMNAWFWSAFFHSRDVELTEKLDYSSAVALVGYSLIVAILRTLNVRDEAARVMVAAPLIAFVTTHILYLNFYELDYGLNMKVCVVMGVTQLLLWAIWAGVTSHPARYKVWIVVFGGGLAMLLEIYDFPPIWGYVDAHAVWHATTVPLTYLWWSFIKEDALSRTEKLVTRSKDKIEPKKAQ*

Protein Length: 358

Fln nts: ATGGGGGCTAAACCGCTTGATATTTGCTACTGAGGTGGTCAAAACACATAAAACGGAAATCGTCGTGACCTTGGCTGTCACTCAGTTTTCTTTGGTCTATCTCTGAACCGTTTGACTGTTCGCATCTCCAAATTCACGATTTGGAAATTCGGTTTTCAATGCCATGATTTTGAGGCCGAAATCAACTGGATTCCGACAATGGAAGCCTAGGGTTTGAAGTTTAACGGCTTACATAGTCTATTTTATTTTTGTAGGCAGTGGGAGATTTGAAAGCATTAGCG_-_ATGGCAGATCGGGACTTGCCAGGTTCGATGGTTCTCGTGCTGGTACTCCTCCTCAGCTCGGTGGTGGCTTCCTACGCAAGCGCTGGCGATGCCGATCCTCTTTACAGGTCATGTGTAGAGAATTGCGAGAAAACTGGCTGTGTCGAAAAAACTTGTTTCAAGTATTGCAAACTGCCTGTAAACGGTGCTTCTGTGGAAGGTGCCTGGTTTATGCAAGAACCTCTGTACTTGCGTTGGAAAGAATGGGACTGTAAGAGCGACTGTCGCTACCACTGTATGGTTAAAAGGGAGGCAGACAGGGAGAGTCTGGGACAGAAGCCTGTAAAATATCATGGAAAATGGCCTTTCAAGCGAGTTTTTGGCTTCCAGGAGCCAGTGTCAGTGGCATTCTCTGTCTTTAATCTTTCCTTGCAGTTCCATGGATGGCTCTCATTCTTAATTCTTGTATATTACAAGCTACCATTGAGGCCTCAAAGCAGAAGTACATACTATGACTTTACTGGCTTGTGGAATATATATGGCATTTTATCCATGAATGCATGGTTTTGGAGTGCCTTCTTTCACAGCAGGGATGTGGAGTTAACAGAAAAACTTGATTATTCATCAGCGGTGGCACTAGTGGGCTACTCACTAATTGTGGCCATCCTTCGGACCTTAAATGTTAGGGATGAGGCTGCTCGAGTTATGGTGGCTGCCCCATTGATAGCATTTGTGACCACTCACATCTTGTACCTTAACTTCTATGAACTCGATTATGGATTGAACATGAAAGTATGTGTTGTAATGGGGGTGACGCAGCTTCTGTTGTGGGCAATCTGGGCTGGTGTCACTTCCCATCCGGCACGATACAAGGTATGGATAGTAGTTTTCGGGGGAGGGCTGGCCATGCTTCTCGAGATTTATGACTTTCCCCCAATCTGGGGATATGTGGATGCTCATGCTGTATGGCATGCAACAACTGTCCCTCTGACATACCTTTGGTGGAGTTTCATCAAAGAGGATGCTTTGTCAAGAACTGAAAAGCTCGTGACTAGATCCAAAGATAAGATTGAACCCAAGAAAGCACAATAA___CATTATTTTCTTATGCAGATGGACACTTCAGTGGAAGAGAAATCCCTTTTAGAAAGACTGCGTTGTGAAGGATATTTTTTACCTAGTTTTTTCATGTATGTTGTTCGTTTCTGTTCTTTCCATGGGGAGGATGGTTTTTCCATGTATGTTGATCGTTTCTCTTCTTTCCATGGGGGGAAGTGGTTCAGATTGGAATTGCTGTCAAACAACAATCATACCAAGATGACTGACTCTTTGTTTGAGATTTACTTGTATCTGTGGAGAATATTTTGTAGACAAATTTTCCTACCTTTGTATTTAATTTTTCCTCATGTAAAGCAGGCAAGGATAGCTTCTTTTGGGATTAAGGATGGAGGTTTGGACAAAATGTAAAATGATGTAATTTGTTTATGGCATTGATTAAAATTGGCAGATAGAAAGTTATATGCCACTAATATTATGAAACGAAGAAAAATACATCTTGAGAAATTAATTTACTTGATGTAATGAGTACATCTTGGTTAAATGTTTCAA

Fln Alignment:

sp_v1.1_unigene10076___GDADPLYRSCVENCEKTGCVEKTCFKYCKLPVNGASVEGAWFMQEPLYLRWKEWDCKSDCRYHCMVKREADRESLGQKPVKYHGKWPFKRVFGFQEPVSVAFSVFNLSLQFHGWLSFLILVYYKLPLRPQSRSTYYDFTGLWNIYGILSMNAWFWSAFFHSRDVELTEKLDYSSAVALVGYSLIVAILRTLNVRDEAARVMVAAPLIAFVTTHILYLNFYELDYGLNMKVCVVMGVTQLLLWAIWAGVTSHPARYKVWIVVFGGGLAMLLEIYDFPPIWGYVDAHAVWHATTVPLTYLWWSFIKEDALSRTEKLVTRSK
A5BYH9_______________GDSDPLYKACIEQCEKTGCVGDKCFQHCKLSSDGNPIGGPWYLQEPLYLRWKQWDCRSDCRYHCMLAREEEREELGDKPVKYHGKWPFRRVYGIQEPVSVALATLNLAMQFHGWVSFLILLYYKLPLRPDKK-TFYEYTGLWHIYGILAMNAWFWNAVFHSRDVDLTEKLDYSSGVALLGFTLILAILRAFNVRDEAARVMIAAPLMAFVTTHILYLNFYKLDYGLNMKVCLTMGIAQLLLWTVWAGVTHHPSRWKLWVVVVGGALAMFLEIYDFPPYWGFVDAHAVWHALAIPFTYLWWSFVKDDSEFRTSALMKKVK

SNPs (tot: 36)

Position	A %	C %	G %	T %	Probability
73	25	25	50		0.995533
75		50		25	0.995533
76	25	25		50	0.995533
77	25		75		0.996473
78	25			75	0.996473
79		50	50		1.0
82	25	25		50	0.995533
86			75	25	0.996473
87			25	75	0.996473
88			25	75	0.996473
90			25	75	0.996473
94		25		75	0.996473
95	25		75		0.996473
96		25	75		0.996473
99	25			75	0.996473
288	80		20		0.995493
301		88	11		0.923564
302		88	11		0.923564
303	88		11		0.923564
305			88	11	0.923564
575	16	83			1.0
699		89		10	1.0
1017			12	87	0.999964
1447	90		10		0.90298
1448		20		70	0.999998
1449		20	70	10	0.999998
1451	90	10			0.90298
1457			10	90	0.90298
1458		10		90	0.90298
1459		90		10	0.90298
1462		11		88	0.923564
1800	10	90			0.90298
1801	10			90	0.90298
1806	90	10			0.90298
1807	11		88		0.923564
1808	11	88			0.923564

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain