SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene10060

Length: 2621 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

>sp_v1.1_unigene10060
CGTCGTGACCTTGGCTGTCACTCAATATAGGCATGGTTTCAGGCTTGGCAAAGGTACAGAGGCACAGAGCTGGCCGTGCAAGGAGCAGGTGGATTCCATCCATTTGAGTCCCAATTTTCTGATTAAAAGCTTTTTATTACAGAGATCGTCAGTGTGTAAAGCAGCAGGATTCTTTAGCTACTATATACGCCGGTTCCAGGACTTGGAACTACGGTGGCTAAATTTGTCGAGTTGCTTCTGTTTCTGGCGTTAGGCCGTGCTGCTTTGGCCAGCCATTGACAGGAATCTGGGCAGCTCCTACCTTCGTTTCTTACAAGCAACTCGCCAGGTGTTAATTGACGGTGATCATGGAAGAATTTCCCCACCATTGGGTTTGATGACGGTGTCGTAAAAAAGCTGCTTCTGCTGCGATTATGGTCTAAGACACAGAAAGTTTTGCCGTCAACCACGGGCGGAAGGACTGAGGCATGGGGTCGCTGTAGGGCAGAGGCGAGGCGCTCGAGTGAAATTATTAATTTTATGGTGGAGTGAAATATTTTTCAACAGTGCGAAAGCATGGGTTGTTGCCCTTCAAGGCATTATCTCTCACCCCCTCCCAAGGAACAGGTTGTAGAAAGCACGAGGCTTGAAGAAAATGGAGATGATCCTGAACCTGATTCTATTCCACCATTCACAGAGTATTCTCTTGAGGAGCTCAGAGCTGCTACAAATTACTTCAACTCTGATAATATTGTGTCCGAAAGTGGAGAGAAGGCTCCCAATGTTGTCTATAAGGGAAGAATGGATAACAATCGGTGGATTGCAGTGAAAAAGTTTCCCAAAGTAGCTTGGCCTGATGCCAAACAGTTTGTGGATGAAGCCTGGGGAGTTGGGCGGCTGCGGCATGAGAGACTGGTCAATTTAATAGGGTATTGCTGTGAAGGAGATGAACGGCTTTTAGTTGCAGAGTACATGCCTAATGACACACTTGTAAAACATCTTTTTCACTGGGAGAAGCAGACAATGGAATGGGCTATGCGTTTGAGAGTTGCCCTTTACATTGCTCAAGCCTTAGAGCATTGTAGTAATGAAGGCCGACCCCTGTACCATGACTTAAATGCCTACAGGGTGCTTTTTGATCAGGAGGGGGACCCTCGTCTTTCATGCTTCGGGCTTATGAAAAACAGCAGAGATGGAAAGAGCTACAGCACAAATCTTGCCTACACACCTCCTGAATATCTAAGAACTGGAAGGGTCACACCTGAAAGCGTTATCTACAGTTATGGCACTGTTCTTTTGGATCTCTTAAGTGGAAAGCACATTCCTCCCAGCCATGCTCTTGATTTGATACGGGAAAAAAATATGCTACTACTAATGGATTCCCACTTAGAAGGGAAATTTCCAACAGAAGAAGGAACTGAGCTTGTGCGCATTGCTTCACGTTGTTTACAATATGAGCCACGTGAGAGGCCTAATCCAAAGACGCTTGTAGCTGTTTTGACACCTCTGCAGCAGAGGTCAGAGGTACCATCTCATGTCATGATGGCTATAACAAGACAGGAAACAACACCGCCATCTCCACAAATTCCACTTTCTCAGTTGGGAGAAGCCTGTGCTAGAATGGATTTGACTGCAATGCATCAGATAATGGTCATGATGCATTACAAGGATGATGAAGGTACTAATGAGTTATCTTTCCAAGAGTGGACACAGCAAATGCAGGATATGCTAAATGCAAGGAAACATGGTGATGTTGCTTTTCGTGAAAAAGACTTTAAGACAGCCATAGACTATTACGCCCAGTTTATAGAGGTTGGGACCATGGTATCCCCTACTGTTTATGCAAGGAGGAGTCTAGCATATCTTCTTTGCGATCAACCAGATGCTGCTCTTCGTGATGCAATGCAAGCACAATGTGTATACCCTGACTGGCCAACTGCATTTTACATGCAAGCGGCTGCACTTACTAAACTTAACATGCACAAGGATGCTGCTGACATGTTAAAAGAAGGGGCCGCACTGGAGGAAAAGCGACAAGCAGCAAGAGGTTCCTAGAAAAGCATCAATTTTGACATACACAAATCTGATGAACTGTTTTTAGTTGTACCTGACACTCGAATGAACGATGCAATCTTCTTGTGTCATTTTGTTGGCAATCACATTTGCCACGTTATGGAACAGGTATAGTTCCATAACTTTATAGTAGCATATCTATCTTAGTAATGCACAATATTTATTATTCTTTCGGGATATACAAGAAGAGGATTATTATGATAGAACTACAACCACTTCTGGCAGGGAGTTTGGTGCTCATTTTAAGAGAGTGTTCATAAATGTGAAGGTGATACCCCTAAGTTATGCATATTGTAACCAGAATTTCTCATGGCACTCAAGTCACTGTATTGTTGGCCGAAGGTCCATTATTATATTGTGTCCATTTTAAGGTTGTAGTGATGTTTCTTATGATTTCCGGGAGTGAGTAATCTTTTGTGTGAGAATATGCTTCAATTCTGGGAATATTTCTCATTCCAGCATTCTGTTGGATGACAATTATGAGATGCAGATCATGAATATGTCTTGCTATTCCCAACCCATCAAAAATGATATTACGAAAGTTCCTATTCTGTTTGCTTCTTATACAT

Ace file of the UniGene sp_v1.1_unigene10060

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	receptor protein kinase, putative	-	-	73%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	68%
Blast2go	protein	-	-	83%

Source	ECs	Term	Type	e value	Identity
Blast2go	Polygalacturonase.	EC:3.2.1.15	-	0.0	83%

Source	KEGGs	Term	Identity
Blast2go	Pentose and glucuronate interconversions	00040	83%
Blast2go	Starch and sucrose metabolism	00500	83%
Blast2go	Metabolic pathways	01100	83%

Source	GOs	Term	Type	Identity
Blast2go	carbohydrate metabolic process	GO:0005975	Biological Process	83%
Blast2go	brassinosteroid mediated signaling pathway	GO:0009742	Biological Process	83%
Blast2go	protein phosphorylation	GO:0006468	Biological Process	83%
Blast2go	protein kinase activity	GO:0004672	Molecular Function	83%
Blast2go	receptor activity	GO:0004872	Molecular Function	83%
Blast2go	ATP binding	GO:0005524	Molecular Function	83%
Blast2go	protein binding	GO:0005515	Molecular Function	83%
Blast2go	polygalacturonase activity	GO:0004650	Molecular Function	83%
Blast2go	vacuole	GO:0005773	Cellular Component	83%
Blast2go	plasma membrane	GO:0005886	Cellular Component	83%

Source	InterPros	Term	Type	Identity
Blast2go	Protein kinase, catalytic domain	IPR000719	-	83%
Blast2go	Serine-threonine/tyrosine-protein kinase catalytic domain	IPR001245	-	83%
Blast2go	Serine/threonine- / dual-specificity protein kinase, catalytic domain	IPR002290	-	83%
Blast2go	Protein kinase-like domain	IPR011009	-	83%
Blast2go	Tetratricopeptide-like helical	IPR011990	-	83%
Blast2go	Tyrosine-protein kinase, catalytic domain	IPR020635	-	83%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: D5A9S6

Fln msg:

Fln protein: MGCCPSRHYLSPPPKEQVVESTRLEENGDDPEPDSIPPFTEYSLEELRAATNYFNSDNIVSESGEKAPNVVYKGRMDNNRWIAVKKFPKVAWPDAKQFVDEAWGVGRLRHERLVNLIGYCCEGDERLLVAEYMPNDTLVKHLFHWEKQTMEWAMRLRVALYIAQALEHCSNEGRPLYHDLNAYRVLFDQEGDPRLSCFGLMKNSRDGKSYSTNLAYTPPEYLRTGRVTPESVIYSYGTVLLDLLSGKHIPPSHALDLIREKNMLLLMDSHLEGKFPTEEGTELVRIASRCLQYEPRERPNPKTLVAVLTPLQQRSEVPSHVMMAITRQETTPPSPQIPLSQLGEACARMDLTAMHQIMVMMHYKDDEGTNELSFQEWTQQMQDMLNARKHGDVAFREKDFKTAIDYYAQFIEVGTMVSPTVYARRSLAYLLCDQPDAALRDAMQAQCVYPDWPTAFYMQAAALTKLNMHKDAADMLKEGAALEEKRQAARGS*

Protein Length: 494

Fln nts: CGTCGTGACCTTGGCTGTCACTCAATATAGGCATGGTTTCAGGCTTGGCAAAGGTACAGAGGCACAGAGCTGGCCGTGCAAGGAGCAGGTGGATTCCATCCATTTGAGTCCCAATTTTCTGATTAAAAGCTTTTTATTACAGAGATCGTCAGTGTGTAAAGCAGCAGGATTCTTTAGCTACTATATACGCCGGTTCCAGGACTTGGAACTACGGTGGCTAAATTTGTCGAGTTGCTTCTGTTTCTGGCGTTAGGCCGTGCTGCTTTGGCCAGCCATTGACAGGAATCTGGGCAGCTCCTACCTTCGTTTCTTACAAGCAACTCGCCAGGTGTTAATTGACGGTGATCATGGAAGAATTTCCCCACCATTGGGTTTGATGACGGTGTCGTAAAAAAGCTGCTTCTGCTGCGATTATGGTCTAAGACACAGAAAGTTTTGCCGTCAACCACGGGCGGAAGGACTGAGGCATGGGGTCGCTGTAGGGCAGAGGCGAGGCGCTCGAGTGAAATTATTAATTTTATGGTGGAGTGAAATATTTTTCAACAGTGCGAAAGC_-_ATGGGTTGTTGCCCTTCAAGGCATTATCTCTCACCCCCTCCCAAGGAACAGGTTGTAGAAAGCACGAGGCTTGAAGAAAATGGAGATGATCCTGAACCTGATTCTATTCCACCATTCACAGAGTATTCTCTTGAGGAGCTCAGAGCTGCTACAAATTACTTCAACTCTGATAATATTGTGTCCGAAAGTGGAGAGAAGGCTCCCAATGTTGTCTATAAGGGAAGAATGGATAACAATCGGTGGATTGCAGTGAAAAAGTTTCCCAAAGTAGCTTGGCCTGATGCCAAACAGTTTGTGGATGAAGCCTGGGGAGTTGGGCGGCTGCGGCATGAGAGACTGGTCAATTTAATAGGGTATTGCTGTGAAGGAGATGAACGGCTTTTAGTTGCAGAGTACATGCCTAATGACACACTTGTAAAACATCTTTTTCACTGGGAGAAGCAGACAATGGAATGGGCTATGCGTTTGAGAGTTGCCCTTTACATTGCTCAAGCCTTAGAGCATTGTAGTAATGAAGGCCGACCCCTGTACCATGACTTAAATGCCTACAGGGTGCTTTTTGATCAGGAGGGGGACCCTCGTCTTTCATGCTTCGGGCTTATGAAAAACAGCAGAGATGGAAAGAGCTACAGCACAAATCTTGCCTACACACCTCCTGAATATCTAAGAACTGGAAGGGTCACACCTGAAAGCGTTATCTACAGTTATGGCACTGTTCTTTTGGATCTCTTAAGTGGAAAGCACATTCCTCCCAGCCATGCTCTTGATTTGATACGGGAAAAAAATATGCTACTACTAATGGATTCCCACTTAGAAGGGAAATTTCCAACAGAAGAAGGAACTGAGCTTGTGCGCATTGCTTCACGTTGTTTACAATATGAGCCACGTGAGAGGCCTAATCCAAAGACGCTTGTAGCTGTTTTGACACCTCTGCAGCAGAGGTCAGAGGTACCATCTCATGTCATGATGGCTATAACAAGACAGGAAACAACACCGCCATCTCCACAAATTCCACTTTCTCAGTTGGGAGAAGCCTGTGCTAGAATGGATTTGACTGCAATGCATCAGATAATGGTCATGATGCATTACAAGGATGATGAAGGTACTAATGAGTTATCTTTCCAAGAGTGGACACAGCAAATGCAGGATATGCTAAATGCAAGGAAACATGGTGATGTTGCTTTTCGTGAAAAAGACTTTAAGACAGCCATAGACTATTACGCCCAGTTTATAGAGGTTGGGACCATGGTATCCCCTACTGTTTATGCAAGGAGGAGTCTAGCATATCTTCTTTGCGATCAACCAGATGCTGCTCTTCGTGATGCAATGCAAGCACAATGTGTATACCCTGACTGGCCAACTGCATTTTACATGCAAGCGGCTGCACTTACTAAACTTAACATGCACAAGGATGCTGCTGACATGTTAAAAGAAGGGGCCGCACTGGAGGAAAAGCGACAAGCAGCAAGAGGTTCCTAG___AAAAGCATCAATTTTGACATACACAAATCTGATGAACTGTTTTTAGTTGTACCTGACACTCGAATGAACGATGCAATCTTCTTGTGTCATTTTGTTGGCAATCACATTTGCCACGTTATGGAACAGGTATAGTTCCATAACTTTATAGTAGCATATCTATCTTAGTAATGCACAATATTTATTATTCTTTCGGGATATACAAGAAGAGGATTATTATGATAGAACTACAACCACTTCTGGCAGGGAGTTTGGTGCTCATTTTAAGAGAGTGTTCATAAATGTGAAGGTGATACCCCTAAGTTATGCATATTGTAACCAGAATTTCTCATGGCACTCAAGTCACTGTATTGTTGGCCGAAGGTCCATTATTATATTGTGTCCATTTTAAGGTTGTAGTGATGTTTCTTATGATTTCCGGGAGTGAGTAATCTTTTGTGTGAGAATATGCTTCAATTCTGGGAATATTTCTCATTCCAGCATTCTGTTGGATGACAATTATGAGATGCAGATCATGAATATGTCTTGCTATTCCCAACCCATCAAAAATGATATTACGAAAGTTCCTATTCTGTTTGCTTCTTATACAT

Fln Alignment:

sp_v1.1_unigene10060___MGCCPSRHYLSPPPKEQVVESTRL-EENGDDPEPDSIPPFTEYSLEELRAATNYFNSDNIVSESGEKAPNVVYKGRMDNNRWIAVKKFPKVAWPDAKQFVDEAWGVGRLRHERLVNLIGYCCEGDERLLVAEYMPNDTLVKHLFHWEKQTMEWAMRLRVALYIAQALEHCSNEGRPLYHDLNAYRVLFDQEGDPRLSCFGLMKNSRDGKSYSTNLAYTPPEYLRTGRVTPESVIYSYGTVLLDLLSGKHIPPSHALDLIREKNMLLLMDSHLEGKFPTEEGTELVRIASRCLQYEPRERPNPKTLVAVLTPLQQRSEVPSHVMMAITRQETTPPSPQIPLSQLGEACARMDLTAMHQIMVMMHYKDDEGT-NELSFQEWTQQMQDMLNARKHGDVAFREKDFKTAIDYYAQFIEVGTMVSPTVYARRSLAYLLCDQPDAALRDAMQAQCVYPDWPTAFYMQAAALTKLNMHKDAADMLKEGAALEEKR
D5A9S6_______________MGCLQSKTSNMPTPDEESVENEKPNQENDDQFETERVPSFKEYALADLKAATRGFSSEYIVSEGGEKAPNVVFKGKLENNRWIAVKRFPKQSWPDARQFAAEAAGVGRVRHKRLVNLIGFCSEADERLLVAEFMPYDTLSKHLFHWEKQPMPWAMRLRVAYYIAQALDHCNSENHRIYHDLNTYRVLFDEDGDPRLSSFGLMKNSRDGKSYSTNLAYTPPEFLRTGRVTPESVIYSYGTVLLDLLSGKHIPPSHALDLIRGKNVLVLMDSSLDGQYANEDATELVGLASRCLQSEPRDRPNAKFLVTALAPLQMQIEVPSDVLMGITKVTASLP---VMLSPLGKACARMDLTAVHDVLVKTGYKDDEGAENELSFQEWTQQVQEMLNMKKCGDIAFRDKDFKTAIEYYSKLVNVMTIPSPTVFARRSLAYLMSDQPQLALRDAMQAQVCQPEWPTAFYMQAISLAKLGMERDSQDMLREGATLEAKK

SNPs (tot: 20)

Position	A %	C %	G %	T %	Probability
155	12		87		0.992554
157		87	12		0.992554
158	87		12		0.992554
160			12	87	0.992554
722		16		83	0.999991
1002	88			11	0.923564
1004		88	11		0.923564
1005	88		11		0.923564
1069	12			87	0.992554
1119		11		88	0.923564
1150	81		18		0.999994
1183	81		18		0.999994
1337		85		14	0.993533
1342	85		14		0.993533
1750		10		90	0.90298
2437	18		81		0.999994
2438	18			81	0.999994
2439	18		81		0.999994
2441	18			81	0.999994
2442	10		90		0.90298

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain