SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene10058

Length: 2239 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

>sp_v1.1_unigene10058
CGTCGTGACCTTGGCTGTCACTCAGTATTTCCTGAAACCCTGGGACCGTTGATAGAAGCTTTCAAAACCCCAACAACCCCATCGATTTTTTCCACGCGATCTTCAAATTGCTCGCTGTACAAGTTACGGAGTCATCAGATCTAGAATCTCTGAAATTTCTTAAGTGGAAGGCTATTTCGCGTTAGGATATAATCCTAGTTTTGCATGAATGGCTCCCATCATGCTCCGTAAACATTTATTTGATGGATCGGCCTTGGGATCTTTGGCTTCGCTAGAATTTCTTCACTGAGGGTTTGCTTGATTTGGTTGAGGATTGGTTGGATGTGAAATCAAAGGAGTGGTTGTTTGCGTTTGGCAGCAGCAGTGAAGACGAAGGATTGGCTGTGGATTGATTGTGTCAGTTGTTGCCTGATTTACCATTTGTTCAGTGCTGGAGTGTTTTCATTATCCAAGATTGGAAGAAGAGGAGAAACGTGAGTTGAATTTGCTGGGTTTGTGATTGTATTTGTTTGGTGAAGATTTATTGACAGGTAACTTGACAGATGAAATGACATGCTAGTTTGGCTGAACAGTTTTTCCTGACAAAACTTCGGGTGTAGGCCATTCAGGAGAAAACCAGGCAATCTGTGTCTGAACATTTCGGGCTTGTTTGAATGCCTATGGGAAGCAAAGTTGTATGAAGGTGTGGTTTAGGGGGAATCACTTGACTTGAATTTCCTATTTTGGAAAGCTTTTTGTAACGTTTCCTGCAAAGTTGTATTGGAGGAAAGGAGCAGATCTGTTTAGATTACCTCTGTAATACAAAGGAACATGTCTGGATTAGAGAGTGAGAACGATCCAGGATGGGTCAAAAAACTAAAATCTGAGGGTGCAGTTCCTCTTCTTGATCCGGATAATTGCCCCAATGGCTGGGCATCTCCTCCTGGGGACTGTTTCCGGGTGAGAGGACCTGATTATTTAACAACTAGGACAAAGATACCTGGAGGGGACTGGCTGCTTAAGCCTTTGGCTTTTGATTGGCTCAAAGGTCCCACTAAGGTTGCTCAGGTGTTAAAGCATCCAAATGGTCGTGTGAAGCGGGCTTTAGAAGAAGCCTGTAAGAATTGCGAAAGTGACAAGAAGCCTTTTGTTTGGGCCTTCAATTTGCAGGTCCCCAGCAAGGATAACCATACTGCAGTTGCATACTTTGTGACTTTTGATCCGATACCAGAAGGATCTCTCATGGACCAATTTCTTAAAGGTGATGATGCATTCAGGAACTCACGTCTGAAGTTGATTGCTAACATTGTCAAGGGACCCTGGATTGTGAGAACAGCTGTAGGAGAGCAGGCTATTTGCATCCTTGGAAGAGCCGTTTCATGCAAGTATTTGCTGGGTGAGAATTTCATAGAGGTTGATGTGGATATTGGAGCCTCCATGGTTGCTAATGCAATTGTGCACTTGGCATTTGGTTATATTACAAGTTTGACAGTTGATTTAGCATTTCTTATTGAGAGCCAGACTGACGCAGAACTTCCTGAGAGGATTTTAGGAGCAGTCAGGTTCTCAGAGATTGATCCAGCTTCTGCCCATACAGTCGTTCAGCCCTCCCAGATTTATTTAGAGAATGGAGAGTCGTCAGTTCCTGCACGATTTTGGAATTGGAAATCAATTGGGCAAGGTTTCTCTCAGCTTTTACATGCAAATGCAGCTGATGAGACTGCTTCTGCTTCTCCACGTGTCAATGGGGTTGATTCTACACATGTTAATGGGGCTGATCACATGAAAGAAGATGATGGTGAAATGATGCCCCGGGATTCTTAACAATGTTGGAAAGTTTCCATGCTATCTCTGAAGCTGTTGCTGCACGGGTCTCCTTTAGAGCTTGGCAATGTCTATTTGGCACAAGGATTGAATCTGGTACAGGAGCAGATAAATTCATTTTCTCCGGGGTGCAAAGCAATTGTTAATAGTATGGATTGGGGAACTACTCGGAGTAGTTATTGATTTGCAGAATGAAAAGTGCCACAAAATGGTACAACTTACATTTTAATATTTATTGTTCTTTAGGAAGAATGCTTGTCCACTTGTTGTTTATATGATTCATTTGGCTTTCTTTTGGTAAGCCAGTGGCAATTTAATTATATGTACATGCTATTGAAGTTTCCTTTACAATTTCTCTAAGATTATTGTTCCAAATTCTGAATATACTCTGATTTAATAGCAACTTAGATCTGAACAATATTGTTTAAGGACCTGG

Ace file of the UniGene sp_v1.1_unigene10058

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	DUF1336 domain containing protein	-	-	43%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	45%
Blast2go	lipid binding	-	-	76%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Domain of unknown function DUF1336	IPR009769	-	0.0	76%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NVR7

Fln msg:

Fln protein: MSGLESENDPGWVKKLKSEGAVPLLDPDNCPNGWASPPGDCFRVRGPDYLTTRTKIPGGDWLLKPLAFDWLKGPTKVAQVLKHPNGRVKRALEEACKNCESDKKPFVWAFNLQVPSKDNHTAVAYFVTFDPIPEGSLMDQFLKGDDAFRNSRLKLIANIVKGPWIVRTAVGEQAICILGRAVSCKYLLGENFIEVDVDIGASMVANAIVHLAFGYITSLTVDLAFLIESQTDAELPERILGAVRFSEIDPASAHTVVQPSQIYLENGESSVPARFWNWKSIGQGFSQLLHANAADETASASPRVNGVDSTHVNGADHMKEDDGEMMPRDS*

Protein Length: 332

Fln nts: CGTCGTGACCTTGGCTGTCACTCAGTATTTCCTGAAACCCTGGGACCGTTGATAGAAGCTTTCAAAACCCCAACAACCCCATCGATTTTTTCCACGCGATCTTCAAATTGCTCGCTGTACAAGTTACGGAGTCATCAGATCTAGAATCTCTGAAATTTCTTAAGTGGAAGGCTATTTCGCGTTAGGATATAATCCTAGTTTTGCATGAATGGCTCCCATCATGCTCCGTAAACATTTATTTGATGGATCGGCCTTGGGATCTTTGGCTTCGCTAGAATTTCTTCACTGAGGGTTTGCTTGATTTGGTTGAGGATTGGTTGGATGTGAAATCAAAGGAGTGGTTGTTTGCGTTTGGCAGCAGCAGTGAAGACGAAGGATTGGCTGTGGATTGATTGTGTCAGTTGTTGCCTGATTTACCATTTGTTCAGTGCTGGAGTGTTTTCATTATCCAAGATTGGAAGAAGAGGAGAAACGTGAGTTGAATTTGCTGGGTTTGTGATTGTATTTGTTTGGTGAAGATTTATTGACAGGTAACTTGACAGATGAAATGACATGCTAGTTTGGCTGAACAGTTTTTCCTGACAAAACTTCGGGTGTAGGCCATTCAGGAGAAAACCAGGCAATCTGTGTCTGAACATTTCGGGCTTGTTTGAATGCCTATGGGAAGCAAAGTTGTATGAAGGTGTGGTTTAGGGGGAATCACTTGACTTGAATTTCCTATTTTGGAAAGCTTTTTGTAACGTTTCCTGCAAAGTTGTATTGGAGGAAAGGAGCAGATCTGTTTAGATTACCTCTGTAATACAAAGGAAC_-_ATGTCTGGATTAGAGAGTGAGAACGATCCAGGATGGGTCAAAAAACTAAAATCTGAGGGTGCAGTTCCTCTTCTTGATCCGGATAATTGCCCCAATGGCTGGGCATCTCCTCCTGGGGACTGTTTCCGGGTGAGAGGACCTGATTATTTAACAACTAGGACAAAGATACCTGGAGGGGACTGGCTGCTTAAGCCTTTGGCTTTTGATTGGCTCAAAGGTCCCACTAAGGTTGCTCAGGTGTTAAAGCATCCAAATGGTCGTGTGAAGCGGGCTTTAGAAGAAGCCTGTAAGAATTGCGAAAGTGACAAGAAGCCTTTTGTTTGGGCCTTCAATTTGCAGGTCCCCAGCAAGGATAACCATACTGCAGTTGCATACTTTGTGACTTTTGATCCGATACCAGAAGGATCTCTCATGGACCAATTTCTTAAAGGTGATGATGCATTCAGGAACTCACGTCTGAAGTTGATTGCTAACATTGTCAAGGGACCCTGGATTGTGAGAACAGCTGTAGGAGAGCAGGCTATTTGCATCCTTGGAAGAGCCGTTTCATGCAAGTATTTGCTGGGTGAGAATTTCATAGAGGTTGATGTGGATATTGGAGCCTCCATGGTTGCTAATGCAATTGTGCACTTGGCATTTGGTTATATTACAAGTTTGACAGTTGATTTAGCATTTCTTATTGAGAGCCAGACTGACGCAGAACTTCCTGAGAGGATTTTAGGAGCAGTCAGGTTCTCAGAGATTGATCCAGCTTCTGCCCATACAGTCGTTCAGCCCTCCCAGATTTATTTAGAGAATGGAGAGTCGTCAGTTCCTGCACGATTTTGGAATTGGAAATCAATTGGGCAAGGTTTCTCTCAGCTTTTACATGCAAATGCAGCTGATGAGACTGCTTCTGCTTCTCCACGTGTCAATGGGGTTGATTCTACACATGTTAATGGGGCTGATCACATGAAAGAAGATGATGGTGAAATGATGCCCCGGGATTCTTAA___CAATGTTGGAAAGTTTCCATGCTATCTCTGAAGCTGTTGCTGCACGGGTCTCCTTTAGAGCTTGGCAATGTCTATTTGGCACAAGGATTGAATCTGGTACAGGAGCAGATAAATTCATTTTCTCCGGGGTGCAAAGCAATTGTTAATAGTATGGATTGGGGAACTACTCGGAGTAGTTATTGATTTGCAGAATGAAAAGTGCCACAAAATGGTACAACTTACATTTTAATATTTATTGTTCTTTAGGAAGAATGCTTGTCCACTTGTTGTTTATATGATTCATTTGGCTTTCTTTTGGTAAGCCAGTGGCAATTTAATTATATGTACATGCTATTGAAGTTTCCTTTACAATTTCTCTAAGATTATTGTTCCAAATTCTGAATATACTCTGATTTAATAGCAACTTAGATCTGAACAATATTGTTTAAGGACCTGG

Fln Alignment:

sp_v1.1_unigene10058___GLESENDP--GWVKKLKSEGAVPLLDPDNCPNGWASPPGDCFRVRGPDYLTTRTKIPGGDWLLKPLAFDWLKGPTKVAQVLKHPNGRVKRALEEACKNCESDKKPFVWAFNLQVPSKDNHTAVAYFVTFDPIPEGSLMDQFLKGDDAFRNSRLKLIANIVKGPWIVRTAVGEQAICILGRAVSCKYLLGENFIEVDVDIGASMVANAIVHLAFGYITSLTVDLAFLIESQTDAELPERILGAVRFSEIDPASA---HTVVQPSQIYLENGESSVPARFWNWKSIGQGFSQLLHANAADETASASPRVNGVDSTHVN
A9NVR7_______________GFESATDPEIDWKEEILRGGSLQQVDPEDGINGWSSPPGNLFHVRGSNYFTKKQKVPAGDWLLKPLGMDWLKAGSKLDHVLGRPDNRVMAALSKANSDGKG-LKTFVFAVNLQVPGREPHSAVFYYATDDPIPVGSLFYRFIHEDDHFRNSRFKIVNRIVKGPWIVKTAVGNYAACLLGKALRCNYIKGSNYLEIDVDIGSSALASAILHLALGYVNSVTVDMGFLVESQAEEELPERLLGAVRVSQMQMGSAARLDVVAAEDRCGGKPSGENYQGSGFQRSKLGRGLSLLKNAHPQKVKAEAAEEEEEGNIKHVS

SNPs (tot: 32)

Position	A %	C %	G %	T %	Probability
88	25			75	0.996473
91			25	75	0.996473
92			25	50	0.995533
93		75	25		0.996473
94		75	25		0.996473
161		25		75	0.996473
166		25		75	0.996473
219	81		18		0.999994
222	87		12		0.999964
225	11	88			0.999952
238		10		89	0.999919
536		50		50	1.0
552	50		50		1.0
596	20			80	0.995493
598	20			80	0.995493
600		25	75		0.996473
722			80	20	0.995493
740	42			57	1.0
843			50	50	1.0
932		25		75	0.996473
1002	85		14		0.993533
1107	10		90		0.90298
1378			25	75	1.0
1681		10		90	0.90298
1700	90	10			0.90298
1790	11	88			0.923564
1793		88		11	0.923564
1794			88	11	0.923564
1797	88	11			0.923564
1801		11		88	0.923564
1803	88	11			0.923564
2164	60		40		1.0

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain