SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene10044

Length: 2022 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

>sp_v1.1_unigene10044
AAGCATAGGCTCAGCTAGTGGGCTATCAACAACAGGAATACAGAATAGACTGGACAAAATAGAATGGATGGAAATGCGGCTGCTGAACCCTCATAATTGAGTCAAACTCTACTGGCATGACTGCGATTGGGTCCAGCAGTGGTGCCAACAGTCGAGCACAAGATATTGGCTCTTGTCAAACTCATCAAAATCCACCCTTTGGGAAAAATTTGGATGTAGCAACATGTTCAGAAGATGTAACAGATTCCAGTGCTAAAGTTTCGGAGCAGGTATTATGCCAAAATTCAGATGCTGGCAGAAGCTTGGCCTCCTCTGGGACAGAGAAATGTGGTGATGCTGGGGATGGTCCAGAGCCAACAATTACTTCCTCTTCTGGAGGTTCAGGTAATAGTGCAGGAAGGGCAGGAAAGGAGGCTACCAATACCAGCAAGAGGAAGAGTAGAGATGTGGAGGACTCTGAGTGCCAAAGTGAGGATGTTGAATATGAATCTGCAGAAGCAAAGAAGCCAGCTCCGTCACGCACTACAACCTCCAAAAGAAGTCGTGCTGCAGAAGTTCATAATTTGTCAGAAAGGAGGCGAAGGGACAGGATAAATGAGAAAATGAGGGCTTTACAAGAGCTTATACCTCACTGTAACAAGTCTGACAAAGCTTCGATGCTGGATGAAGCTATTGAGTACTTGAAAACACTTCAATTGCAAGTACAGATAATGTCAATGGGAGGTGGAATGGGTATGCCTCCATTTGTGTTTCCTGGAGGTATGCAGCATTTTCAGGTACCACAGATGGCACATCTGTCTCCTATGGGCATGGGCATAGGTATGGGATACGGCATGGGAGTGCTAGATATGGCTGCCACTTCAGGTCGACCTGTTATGTCATTGCCTTCCATGCATGTATCAGCACTTCCTGGTTCCACAATTCATTGCCAAGCTGCATTGCCCTTGTCTGGAATGCCTGGACCAAGCCTTCCAATGTCCAGGCTTCCTGGACCGGGATTACAAGTATCAGGGATGCCTGTATCAACTCTTCCGGTGTCTGGCTTACCTGGAACAACTCAGCCTGGATTAGTCTCAACCTCAGCTTCAGGCTCCACTGATTTGCATGATATGCAGAATGCAAATGTGATAGGTCATTATAAACATTATATGAATCATCATCAGATGCAAGGGCTGCCCCAGGTACTAAATGGAAACTTGTATAATTCTTCAATGGCACAACCTGCTCCTCAAAATCCAGTTCAGTCAGATGGCAGGGGAGCCCACAATACAGTTAGTGCATCTGGAAAGGCCGGCACCACTGGCTAGAAATGGCACCAGTAAATCATTTTCATCAATTTTTTTTTCCTGGGAATGCCCAAAGCGGATATGAGGCTGGGATTGATCCCTTTCTGCGAATGGATTCTTGAGTCTTCTGGGAACAAGTCACAGTAACAAAGCTGCCCTGACTTGGAGGCTTCTGGGGTGTTTTGCAGTTTGTATATTAGTTTTGGAAAAGCATTGGTCTTATATTTAGTTACATCTTCCAAAGGTTTTTAGTGGCCCCAAATATGTATCACAAAAGATCTAGCTTCCACATGGTGGTAGTGTCAATTAAGCGATGCAAATTGCATATTTTGCATCGAGTATGCCTATCGAGATCCCCTCTAACATGTCAGTGCTACCTTATACATGGTCAAGTTTTCTGTAATTATTCTTACAATGTTGATCATGCCAGGAGCTTAAAGGATGTTTAAAAGCTCCGAGGCATTTCAACCCATTCATTTTTGATAGATGTTTGTTTTCTTTCTAGATGTGAGAAAATAGTCTCATTTCTATTTGTTTAGGAGCATTTCCTAAGGTGGTCTGTGCTCTCAAGGCTGAAGGTGTATGCTATAAGCTTAATGAAGTTGGAAATGACATCAACAAACTCCTACTTTCAGCAATTGGGTTCTGGAATCTGGAAGGAGTTATTCCTGGTCATTCGTATAGGGCCAATTTGAATTTGTGATTGAAATATTAACTACACTTCATTATGACTCAT

Ace file of the UniGene sp_v1.1_unigene10044

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Helix-loop-helix DNA-binding [Medicago truncatula]	-	-	5.0e-32	39%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	91%
Blast2go	protein	-	-	0.0	65%

Source	GOs	Term	Type	Identity
Blast2go	regulation of cellular transcription, DNA-dependent	GO:0045449	Biological Process	65%
Blast2go	transcription regulator activity	GO:0030528	Molecular Function	65%
Blast2go	nucleus	GO:0005634	Cellular Component	65%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Helix-loop-helix DNA-binding domain	IPR001092	-	0.0	65%
Blast2go	Helix-loop-helix DNA-binding	IPR011598	-	0.0	65%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: D5ABG4

Fln msg: your sequence is longer than subject: 397 - 244

Fln protein: MTAIGSSSGANSRAQDIGSCQTHQNPPFGKNLDVATCSEDVTDSSAKVSEQVLCQNSDAGRSLASSGTEKCGDAGDGPEPTITSSSGGSGNSAGRAGKEATNTSKRKSRDVEDSECQSEDVEYESAEAKKPAPSRTTTSKRSRAAEVHNLSERRRRDRINEKMRALQELIPHCNKSDKASMLDEAIEYLKTLQLQVQIMSMGGGMGMPPFVFPGGMQHFQVPQMAHLSPMGMGIGMGYGMGVLDMAATSGRPVMSLPSMHVSALPGSTIHCQAALPLSGMPGPSLPMSRLPGPGLQVSGMPVSTLPVSGLPGTTQPGLVSTSASGSTDLHDMQNANVIGHYKHYMNHHQMQGLPQVLNGNLYNSSMAQPAPQNPVQSDGRGAHNTVSASGKAGTTG*

Protein Length: 398

Fln nts: AAGCATAGGCTCAGCTAGTGGGCTATCAACAACAGGAATACAGAATAGACTGGACAAAATAGAATGGATGGAAATGCGGCTGCTGAACCCTCATAATTGAGTCAAACTCTACTGGC_-_ATGACTGCGATTGGGTCCAGCAGTGGTGCCAACAGTCGAGCACAAGATATTGGCTCTTGTCAAACTCATCAAAATCCACCCTTTGGGAAAAATTTGGATGTAGCAACATGTTCAGAAGATGTAACAGATTCCAGTGCTAAAGTTTCGGAGCAGGTATTATGCCAAAATTCAGATGCTGGCAGAAGCTTGGCCTCCTCTGGGACAGAGAAATGTGGTGATGCTGGGGATGGTCCAGAGCCAACAATTACTTCCTCTTCTGGAGGTTCAGGTAATAGTGCAGGAAGGGCAGGAAAGGAGGCTACCAATACCAGCAAGAGGAAGAGTAGAGATGTGGAGGACTCTGAGTGCCAAAGTGAGGATGTTGAATATGAATCTGCAGAAGCAAAGAAGCCAGCTCCGTCACGCACTACAACCTCCAAAAGAAGTCGTGCTGCAGAAGTTCATAATTTGTCAGAAAGGAGGCGAAGGGACAGGATAAATGAGAAAATGAGGGCTTTACAAGAGCTTATACCTCACTGTAACAAGTCTGACAAAGCTTCGATGCTGGATGAAGCTATTGAGTACTTGAAAACACTTCAATTGCAAGTACAGATAATGTCAATGGGAGGTGGAATGGGTATGCCTCCATTTGTGTTTCCTGGAGGTATGCAGCATTTTCAGGTACCACAGATGGCACATCTGTCTCCTATGGGCATGGGCATAGGTATGGGATACGGCATGGGAGTGCTAGATATGGCTGCCACTTCAGGTCGACCTGTTATGTCATTGCCTTCCATGCATGTATCAGCACTTCCTGGTTCCACAATTCATTGCCAAGCTGCATTGCCCTTGTCTGGAATGCCTGGACCAAGCCTTCCAATGTCCAGGCTTCCTGGACCGGGATTACAAGTATCAGGGATGCCTGTATCAACTCTTCCGGTGTCTGGCTTACCTGGAACAACTCAGCCTGGATTAGTCTCAACCTCAGCTTCAGGCTCCACTGATTTGCATGATATGCAGAATGCAAATGTGATAGGTCATTATAAACATTATATGAATCATCATCAGATGCAAGGGCTGCCCCAGGTACTAAATGGAAACTTGTATAATTCTTCAATGGCACAACCTGCTCCTCAAAATCCAGTTCAGTCAGATGGCAGGGGAGCCCACAATACAGTTAGTGCATCTGGAAAGGCCGGCACCACTGGCTAG___AAATGGCACCAGTAAATCATTTTCATCAATTTTTTTTTCCTGGGAATGCCCAAAGCGGATATGAGGCTGGGATTGATCCCTTTCTGCGAATGGATTCTTGAGTCTTCTGGGAACAAGTCACAGTAACAAAGCTGCCCTGACTTGGAGGCTTCTGGGGTGTTTTGCAGTTTGTATATTAGTTTTGGAAAAGCATTGGTCTTATATTTAGTTACATCTTCCAAAGGTTTTTAGTGGCCCCAAATATGTATCACAAAAGATCTAGCTTCCACATGGTGGTAGTGTCAATTAAGCGATGCAAATTGCATATTTTGCATCGAGTATGCCTATCGAGATCCCCTCTAACATGTCAGTGCTACCTTATACATGGTCAAGTTTTCTGTAATTATTCTTACAATGTTGATCATGCCAGGAGCTTAAAGGATGTTTAAAAGCTCCGAGGCATTTCAACCCATTCATTTTTGATAGATGTTTGTTTTCTTTCTAGATGTGAGAAAATAGTCTCATTTCTATTTGTTTAGGAGCATTTCCTAAGGTGGTCTGTGCTCTCAAGGCTGAAGGTGTATGCTATAAGCTTAATGAAGTTGGAAATGACATCAACAAACTCCTACTTTCAGCAATTGGGTTCTGGAATCTGGAAGGAGTTATTCCTGGTCATTCGTATAGGGCCAATTTGAATTTGTGATTGAAATATTAACTACACTTCATTATGACTCAT

Fln Alignment:

sp_v1.1_unigene10044___MRALQELIPHCNKSDKASMLDEAIEYLKTLQLQVQIMSXXXXXXXXXXXXXXXXQHFQVPQMAHLSPXXXXXXXXXXXXVLDMAATSGRPVMSLPSMHVSALPGSTIHCQAAXXXXXXXXXXXXXXRLPGPGLQVSGMPVSTLPVSGLPGTTQPGLVSTSASGSTDLHD-MQNANVIGHYKHYMNHHQMQGLPQVLNGNLYNSSMAQPAPQNPVQSDGRGAHNTVSASGKAGTTG
D5ABG4_______________MRALQELIPHCNKSDKASMLDEAIEYLKTLQLQVQIMSMGGGMGMPPLVFPGGMQHFQVPQMAHLSPMGMGIGMGYSMGMLDMAATSGRPVMSLPSMHVSALPGSAIHCQAALPLSGMPGPSIPMSRLPGPGLQVSGLPVSTIPVSGLPGTTQPGLVSTSASGSTDLQDHMQNANVMGHYKHYMNHHQMQGPPQVINGNLYNASMAQPPPQNPVQSSGRGIHNAASASGKTGTTG

SNPs (tot: 18)

Position	A %	C %	G %	T %	Probability
447	83			16	0.994512
448	16		83		0.994512
449	83			16	0.994512
455	16			16	0.988813
469		83		16	0.994512
819		14	85		0.993533
847	14			85	0.993533
853	83			16	0.994512
932		25		75	0.996473
1020	75	25			1.0
1133			88	11	0.923564
1304	10	90			0.90298
1307		10		90	0.90298
1308	10		90		0.90298
1309	10		90		0.90298
1314	90		10		0.90298
1325	12		87		0.992554
1327	87		12		0.992554

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain