SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene10027

Length: 978 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene10027

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	glutathione s-transferase, putative (EC:4.4.1.5)	-	-	3.0e-30	59%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	95%
Blast2go	protein	-	-	0.0	75%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Glutathione S-transferase, C-terminal-like	IPR010987	-	0.0	75%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NNR2

Fln msg: Separated hits, possible frame ERROR between 274 and 279,

Fln protein: MDEVKLLTIWPSPFGRKVEIALRAKGIAYEILQEEDLKNKKSQLLLESNPVYQKIPVLLHNGRSVCESALIVEYIDGTWPHxxxPQLVPDSPYDRYLLRFWGDFLENKIRDIGVKCADSPVSVKEDYAEMWVTLDSALARGNLMFYDGIKQEKEINYLDACLGSWIPWLEPLEICGGLLVPSSDKCPSLHKWIQSLSQNPIVASTFPAASQMLEYAKGRFHLS*

Protein Length: 225

Fln nts: CAGACCCCCTACAGAAGGATTGTGATTA_-_ATGGATGAAGTTAAGCTGCTGACGATTTGGCCGAGTCCTTTTGGGCGGAAAGTGGAAATAGCCCTGAGGGCCAAAGGGATCGCTTATGAGATCTTGCAGGAGGAAGATCTGAAGAATAAAAAGTCCCAGTTGCTTCTTGAATCCAACCCTGTGTATCAGAAGATCCCTGTGCTTCTCCATAATGGCAGATCAGTCTGTGAATCTGCACTTATTGTAGAATACATCGATGGAACCTGGCCTCATGCxxxxxxGCCCCAATTGGTTCCAGATTCTCCCTACGATCGCTACCTCCTCCGCTTCTGGGGAGATTTTCTTGAAAACAAGATTAGAGATATTGGGGTGAAGTGTGCAGATTCGCCAGTTTCAGTGAAAGAAGATTATGCTGAGATGTGGGTAACTCTGGATTCTGCATTGGCCAGAGGGAACCTGATGTTCTATGATGGAATCAAGCAGGAAAAGGAAATTAATTATCTGGATGCCTGCTTGGGCTCATGGATACCTTGGCTTGAGCCCTTAGAAATATGTGGAGGTTTGCTGGTCCCTTCCAGTGACAAGTGCCCCTCTCTTCATAAATGGATTCAATCTCTCTCACAAAACCCCATTGTTGCATCAACGTTCCCTGCTGCCTCACAGATGCTGGAATATGCTAAAGGACGCTTCCACCTTTCTTAA___CCAACGGTATGAGAGATATATTCAATGTATATATTAATGTTCCGATCTCTTTGCCATCATAAAACCCAATGCTGTAAGGCCATTGATGTTGGTTTTCTGGTTACAATACAATTCAATTCCATCTGGGGAATTCAAGCTGTGGGATTTGATCTTCGATTGCAATAGTTTAGGTTTCAAGAGGACAATTAAAGTTTTCAAGGATTAGTTTTCAGAGTTAGATCTTAAATATTATTGTAAAATATACGTTGCTCACCATAATCAAGATTTCATTTTCTGTGCC

Fln Alignment:

sp_v1.1_unigene10027___MDEVKLLTIWPSPFGRKVEIALRAKGIAYEILQEEDLKNKKSQLLLESNPVYQKIPVLLHNGRSVCESALIVEYIDGTWPHAxxPQLVPDSPYDRYLLRFWGDFLENKIRDIGVKCADSPVSVKEDYAEMWVTLDSALARGNLMFYDGIKQEKEINYLDACLGSWIPWLEPLEICGGLLVPSSDKCPSLHKWIQSLSQNPIVASTFPAASQMLEYAKGRFHLS
A9NNR2_______________MDEVKLLTIWPSPFGRKVEIALRAKGIAYEILQEEDLKNKKSQLLLESNPVYKKIPVLLHNGRSVCESPLILEYIDGTWPRAxxPQLVPDSPYDRYLLRFWGDFLENKIRDIGVKCADSPVSMKEEYNEMWVTLDSALARGNLMFYDGIKQEKEINYLDACLGSWIPWLQPFEICGGLVLPSCAKCPSLHKWIQALSQNSIVASTFPGASQMMEYAKRRFHLS

SNPs (tot: 1)

Position	A %	C %	G %	T %	Probability
885	66		33		0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain