SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene10026

Length: 1846 nt

Origin of reads: Biogeco_1 Uagpf Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene10026

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Heavy metal ATPase n=1 Tax=Populus trichocarpa RepID=B9GWH1_POPTR	-	-	64%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	54%
Blast2go	heavy metal atpase	-	-	79%

Source	ECs	Term	Type	e value	Identity
Blast2go	Copper-exporting ATPase.	EC:3.6.3.4	-	0.0	79%

Source	GOs	Term	Type	Identity
Blast2go	auxin biosynthetic process	GO:0009851	Biological Process	79%
Blast2go	copper ion transport	GO:0006825	Biological Process	79%
Blast2go	ATP biosynthetic process	GO:0006754	Biological Process	79%
Blast2go	copper ion binding	GO:0005507	Molecular Function	79%
Blast2go	copper-exporting ATPase activity	GO:0004008	Molecular Function	79%
Blast2go	ATP binding	GO:0005524	Molecular Function	79%
Blast2go	integral to membrane	GO:0016021	Cellular Component	79%
Blast2go	plastid	GO:0009536	Cellular Component	79%

Source	InterPros	Term	Type	Identity
Blast2go	ATPase, P-type, K/Mg/Cd/Cu/Zn/Na/Ca/Na/H-transporter	IPR001757	-	79%
Blast2go	Haloacid dehalogenase-like hydrolase	IPR005834	-	79%
Blast2go	ATPase, P-type, ATPase-associated domain	IPR008250	-	79%
Blast2go	ATPase, P-type phosphorylation site	IPR018303	-	79%
Blast2go	HAD-like domain	IPR023214	-	79%
Blast2go	ATPase, P-type, cytoplasmic domain N	IPR023299	-	79%
Blast2go	ATPase, P-type, cytoplasmic transduction domain A	IPR023300	-	79%
Blast2go	ATPase, cation-transporting, domain N	IPR023306	-	79%

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: B8LQ20

Fln msg: Overlapping hits, possible frame ERROR between 959 and 946, your sequence is shorter than subject: 556 - 998

Fln protein: KAEREISSELIQRNDALKVVPGEKIPTDGLVIWGQSHVNESMLTGEPQPVTKRIGDKVFKGTMNQVGGLHVRATHVGSETALSQIVRLVEAAQMNKAPVQMIADRISKYFVPLVVTVAFVTWLAWYTAGKVGSYPKSWIPPSMDEFELALQFGISVLVIACPCALGLATPTAVMVGTGKGASLGVLIKGGQALESAHKVKCVVFDKTGTLTMGRPVVIATKLLKKIAATAFYNIVASAEINSEHPLAKAIVEHARKLRKEEESNESNFYEAQDFQSVTGQGIRAVVNSNQVVVGNRQMMVGSGISIPGDVDKYLxxxxxxKARTGVLVAIETEIVGVIAISDPVKPEAKDVVSILRSLGLKSIMVTGDNWGTAKAIAKEVGIETVIAEVLPDGKAEKIKQLQKEGLAVAMVGDGINDSPALVAADVGMAIGAGTDIAIEAADIVLVRNNLQDVITAIDLSRKTFFRIKLNYVWAFGYNILGIPIAAGVLFPFTGFRLPPWVAGAAMATSSLSVVCSSLLLRYYVPPKQLQYINLSIHKKTNKSKPEEQWKSDGMV*

Protein Length: 557

Fln nts: TCAAAGCTGAACGCGAGATTAGCAGTGAACTGATTCAGAGGAATGACGCTCTAAAAGTTGTTCCAGGGGAAAAGATACCAACAGATGGGTTGGTGATTTGGGGTCAAAGTCATGTCAATGAAAGTATGTTGACAGGGGAACCTCAACCTGTTACAAAAAGGATTGGTGATAAAGTATTCAAAGGAACCATGAATCAAGTAGGAGGGCTGCACGTCAGAGCTACTCATGTAGGTTCTGAAACTGCCCTTTCGCAGATTGTTAGGCTTGTTGAAGCCGCCCAGATGAATAAAGCTCCAGTTCAAATGATTGCGGATAGAATTTCCAAATATTTTGTTCCCCTGGTCGTTACGGTGGCATTTGTCACCTGGCTGGCATGGTACACTGCAGGAAAGGTAGGATCATACCCGAAGTCATGGATACCCCCTTCAATGGATGAATTTGAACTTGCTTTGCAATTTGGGATCTCTGTGCTTGTCATCGCTTGCCCATGTGCTTTAGGCTTGGCAACACCAACTGCTGTTATGGTAGGTACAGGAAAAGGTGCCTCCCTAGGAGTTCTTATCAAAGGTGGTCAAGCTCTTGAGAGTGCACACAAGGTAAAATGTGTCGTGTTTGACAAGACTGGAACATTGACCATGGGAAGACCTGTCGTCATTGCCACAAAGTTGTTAAAAAAGATTGCCGCTACTGCCTTCTATAATATAGTCGCTTCAGCCGAGATTAACAGTGAACATCCTCTGGCAAAGGCAATCGTTGAGCATGCAAGAAAATTAAGAAAGGAAGAAGAGTCAAACGAATCCAACTTCTACGAAGCACAGGATTTTCAAAGTGTGACAGGCCAAGGTATCAGGGCTGTGGTCAACAGCAACCAAGTAGTGGTTGGCAACAGGCAAATGATGGTAGGATCGGGAATTTCTATTCCAGGAGATGTTGATAAATATCTTxxxxxxxxxxxxxxxxxxAAAGCCAGAACAGGAGTATTAGTTGCAATCGAAACAGAAATAGTAGGAGTAATTGCCATATCAGATCCAGTGAAGCCAGAAGCAAAGGACGTTGTGAGTATTTTGAGGTCCTTGGGATTGAAAAGCATTATGGTCACAGGTGACAACTGGGGTACAGCTAAAGCCATTGCTAAGGAAGTTGGCATTGAAACAGTCATAGCAGAAGTGCTACCCGATGGAAAAGCAGAAAAAATAAAACAATTGCAGAAGGAAGGGCTTGCAGTTGCGATGGTTGGGGATGGGATAAACGACTCGCCGGCTCTGGTGGCTGCAGATGTGGGAATGGCAATCGGTGCAGGAACAGACATCGCTATAGAAGCTGCTGACATTGTGCTGGTGAGGAACAACTTGCAAGATGTTATTACAGCCATAGATTTATCCAGGAAGACATTCTTCAGAATCAAGCTCAATTACGTGTGGGCTTTTGGTTACAATATACTTGGCATCCCCATTGCTGCAGGAGTTTTGTTCCCGTTCACAGGATTTCGGCTCCCTCCCTGGGTTGCCGGGGCTGCCATGGCCACTTCTTCTCTCAGTGTCGTCTGTTCTTCTCTTCTGTTGAGGTATTACGTGCCACCAAAGCAGTTGCAGTACATAAACTTGTCTATCCATAAGAAGACCAACAAATCGAAACCTGAAGAACAATGGAAGTCAGATGGCATGGTCTAAGAAGGAAAAGATGAGAGCTCTAATGGGCATGAATACTATATAATCTGCCATGCTATATGCTAAGTTAAATTTGCATGGCATAATTAACAAGAAATTCTCTAGATAATAAGAGAGCGAGCCAGTAATGAGGCATTTGCTTTCTATTCTGAAAAAAATTCTAATTTCCATTTTAAGAAAG

Fln Alignment:

sp_v1.1_unigene10026___EREISSELIQRNDALKVVPGEKIPTDGLVIWGQSHVNESMLTGEPQPVTKRIGDKVFKGTMNQVGGLHVRATHVGSETALSQIVRLVEAAQMNKAPVQMIADRISKYFVPLVVTVAFVTWLAWYTAGKVGSYPKSWIPPSMDEFELALQFGISVLVIACPCALGLATPTAVMVGTGKGASLGVLIKGGQALESAHKVKCVVFDKTGTLTMGRPVVXXXXXXXXXXXXXFYNIVASAEINSEHPLAKAIVEHA------------RKLRKEEESNESNFYEAQDFQSVTGQGIRAVVNSNQVVVGNRQMMVGSGISIPGDVDKYLxxxxxKARTGVLVAIETEIVGVIAISDPVKPEAKDVVSILRSLGLKSIMVTGDNWGTAKAIAKEVGIETVIAEVLPDGKAEKIKQLQKEGLAVAMVGDGINDSPALVAADVGMAIGAGTDIAIEAADIVLVRNNLQDVITAIDLSRKTFFRIKLNYVWAFGYNILGIPIAAGVLFPFTGFRLPPWVAGAAMATXXXXXXXXXXXXRYYVPPKQLQYINLSI
B8LQ20_______________EKEIDAQLIQRSDMLKVYPGSKVPADGTVVWGSSHVNESMITGESALVSKEVGGTVIGGTLNLNGALHIQATKVGSDAALSQIVRLVETAQMAKAPIQKFADYIASVFVPVVVALAFVTWLGWYLAGVLGAYPEEWLPPASNHFVFALMFAISVLVIACPCALGLATPTAVMVATGIGATHGVLIKGGDALERAQKIQCVVFDKTGTLTKGKPSVTSAKVLSDMQRGEFLRIVASAEASSEHPLARAVVDYAYHFHFFGEPPKDMDMQGLRTKNTAWLLTASKFEALPGKGVRCSIEGTEILVGNRKLMSEDGVFIPSVAEEYLxxxxxHARTGILVAFDKELVGMLAISDPLKREAAVVIEGLKKMGILPIMVTGDNWTTARAVAQELGIEDVKAEVIPAGKAEVIRSLQKDGTMVAMVGDGINDSPALAAADVGMAIGAGTDIAIEAADYVLMRNNLEDVITAIDLSKKTFARIRLNYVFAMGYNIFAIPLAAGLFFPFLKISLPPWVSGAAMALSSVSVVCSSLLLRRYRQPRLTEILDIKI

SNPs (tot: 41)

Position	A %	C %	G %	T %	Probability
121	66		33		0.997452
122	66		33		0.997452
282	66		33		0.997452
283	33			66	1.0
876	66		33		0.997452
1000	14		85		0.993533
1010		14		85	0.993533
1044	87		12		0.992554
1048	12		87		0.992554
1190	66		33		0.997452
1212			75	25	0.996473
1214	75		25		0.996473
1215	75		25		0.996473
1227		25		75	0.996473
1266		20	80		0.995493
1270	20		80		0.995493
1272		20		80	0.995493
1273			80	20	0.995493
1274		80		20	0.995493
1275	80		20		0.995493
1277	80	20			0.995493
1281		20	80		0.995493
1282			80	20	0.995493
1283		20	80		0.995493
1404		16		83	0.994512
1429		33		66	1.0
1442		75	25		1.0
1444		11		88	0.923564
1446			88	11	0.923564
1448	88		11		0.923564
1450		88	11		0.923564
1451	11	88			0.923564
1454	88			11	0.923564
1456			11	88	0.923564
1463			88	11	0.923564
1464		11	88		0.923564
1622	85	14			0.993533
1637	14	85			0.993533
1675	83		16		0.994512
1731	50		50		1.0
1819		25		75	0.996473

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain