SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene10009

Length: 2407 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

>sp_v1.1_unigene10009
CGTCGTGACCTTGGCTGTCACTCATTTTAGGTCAAGGCTGCCCCTCCTTATCCACTTCGCGAAGCAAAATTTCTTTTGTTTCTCATCTGCTTCGTCTCTGCGTTTCTACAGCTCATTGAGCTGATTTTAAAAATCCGAGGATTCTCAGGCTAATTTGCGGCCATTGTGGAGAGGCAGGGTGCAATTTTAGCCATGTTGACTGCTGGTGTTGCCGCTTCCACTGCTATTCATTTTCCGTCATCTCCACGCTATTCTGTCCATGGAGATGCCAAAACGTCCCACAGGAGGTTTTTTGCTTCTCCTGTGGTCTCTAAAAATGCGCTAAAGTGGAGCGCTTTAGTGGGCGGCCATGGGTTTAGCTTGGCCACTAGGAAAGGTTCGAAGTTAAGTAGCCGCAGAGTTGGTGGTGTTAGGTGCGAGGCCACTGTAGCAGAAAAGGAAACAGTAGAATCACCAGCTGAGAAATTTGAATATCAGGCAGAGGTCAGTAGGCTGCTGGATTTGATAGTTCACAGCTTATACAGCCACAAGGAAGTCTTCCTTCGGGAGCTTGTTAGTAATGCAAGTGATGCTCTAGATAAACTGCGGTTTTTAAGTGTGACCGACCCGAGTGTACTTGGAGATGGTGGTGACTTGGAGATCCGCATAAAACCAGATAAGGAGAATGGGACCATCACCATATTGGATACTGGCATCGGTATGACCAAAGAAGAATTAATTGACTGTCTTGGGACTATAGCTCAGAGCGGAACTAAAAAGTTTTTAGAGGCTTTGAAGGAAAATAAGACTGGCCCTGACAACAATTTGATTGGTCAATTTGGTGTAGGCTTCTATTCCGCTTTTCTTGTTGCTGATAAGGTTACTGTCTCAACAAAAAGCCCAAAGTCTGATAAGCAGTATGTGTGGGAAGGAAAAGCTGATACTAGCTCCTATATAATACGGGAGGAGACAGATCCAGAAAATCTTATTGTTAGAGGGAGTAAAATAACCCTTTACCTAAAGCCTGATGACAAGCATGACTATGCTGATCCAGAAAGGGTTCGTAACCTGGTTAAGAATTATTCACAGTTTGTCTCTTTCCCAATATACACATGGCAGGAAAAGTCCCAAACAAAGGAGGTTGAGGATGACAGTGCTGAAGTAAAAGAAGGGGAGGAAAAGAAAACTAAGACTGTGACAGAAAAGTATTGGGACTGGGAATTGGCAAATGAAACAAAGCCTCTCTGGATGCGTAATCCCAAAGAGGTTGCATCAGAAGAGTACAATGAGTTTTACAAGAAGGCATTCAATGAATTTCTGGATCCTTTGACATACAGTCACTTCACAACTGAGGGTGAAGTAGAGTTCAGAAGTGTCCTTTACATCCCTGGTATGGCTCCCCTTAGCACCGAGGATATAATGAATCCAAAGACTAAGAACATTCGTCTATATGTCAAGCGTGTTTTTATTTCTGATGACTTTGATGGTGAATTGTTTCCACGCTATCTGAGCTTTGTTAAAGGTGTTGTCGATTCAAATGATCTTCCTCTTAATGTATCCAGGGAGATCCTCCAAGAAAGCCGTATTGTTCGTATAATGAAGAGGCGTCTTGTACGGAAGACATTTGATATGATTCAGGGTATTGTGGAAAGTGAGAATAAAGATGATTACAAGAAATTCTGGGAGAACTTTGGAAAATATATCAAATTGGGCTGTATCGAAGACTCAAATAATCATCAACGGATTGCTCCTCTTTTACGGTTCTTCTCATCCATGCATGATGAGGAGATGATTAGCTTGGATGATTATATTGAAAATATGACTGAAAAACAAAATGGTATTTTTTATATTGCTTCAGATAGCATTAAAAGTGCCAGGAGTGCACCATTTTTGGAAAAACTTTTGCAGAAGGATATTGAGGTCCTCTATCTCGTAGACCCAATTGATGAGGTTGCTATTCAAAATCTTCAGACATACAAAGACAAAAAATTTGTTGATATTAGTAAAGAAGACCTGGACCTAGGTGATTTGGACGAAGTGAAGGACAGAGAAGCCGAGAGGGAATATGCTGTACTTTGTGACTGGATGAAGCAACAATTGGGAGATAAAGTAGCAAAAGTTCAAATATCAAAGCGCTTAAGCTCATCCCCATGTGTGCTTGTTGCAGGAAAGTTTGGGTGGTCAGCAAACATGGAAAGGCTTATGAAGGCACAGACTCTGGGTGATACGTCGAGTCTGGAGTTTATGCGTGGAAGACGAATCTTAGAGATAAACCCAGATCACCCAATCATCCAAGATCTCAATGGTGCATGCAAGGATGCTCCTAACAATCCTGAAGCTCAGAGGGCAGTTGAACTTTTGTATGATACTGCACTGATATCTAGTGGATTTGCTCCTGAGAATCCAGCTGAGTTAGGTGGAAAGATTT

Ace file of the UniGene sp_v1.1_unigene10009

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	CR88; CR88; ATP binding	-	-	79%
FL-Next	tr=GRP94; Pinus taeda (Loblolly pine).	-	-	45%
Blast2go	cr88 atp binding	-	-	87%

Source	GOs	Term	Type	Identity
Blast2go	response to water deprivation	GO:0009414	Biological Process	87%
Blast2go	embryo development ending in seed dormancy	GO:0009793	Biological Process	87%
Blast2go	protein folding	GO:0006457	Biological Process	87%
Blast2go	response to salt stress	GO:0009651	Biological Process	87%
Blast2go	response to chlorate	GO:0010157	Biological Process	87%
Blast2go	response to heat	GO:0009408	Biological Process	87%
Blast2go	de-etiolation	GO:0009704	Biological Process	87%
Blast2go	ATP binding	GO:0005524	Molecular Function	87%
Blast2go	unfolded protein binding	GO:0051082	Molecular Function	87%
Blast2go	mitochondrion	GO:0005739	Cellular Component	87%
Blast2go	chloroplast stroma	GO:0009570	Cellular Component	87%
Blast2go	plasma membrane	GO:0005886	Cellular Component	87%

Source	InterPros	Term	Type	Identity
Blast2go	Heat shock protein Hsp90	IPR001404	-	87%
Blast2go	ATPase-like, ATP-binding domain	IPR003594	-	87%
Blast2go	Heat shock protein Hsp90, conserved site	IPR019805	-	87%
Blast2go	Ribosomal protein S5 domain 2-type fold	IPR020568	-	87%
Blast2go	Heat shock protein Hsp90, N-terminal	IPR020575	-	87%

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: coniferopsida.fasta

Fln subject: A7YAU9

Fln msg: Distance to subject end: 70 aas, your sequence is shorter than subject: 738 - 834

Fln protein: MLTAGVAASTAIHFPSSPRYSVHGDAKTSHRRFFASPVVSKNALKWSALVGGHGFSLATRKGSKLSSRRVGGVRCEATVAEKETVESPAEKFEYQAEVSRLLDLIVHSLYSHKEVFLRELVSNASDALDKLRFLSVTDPSVLGDGGDLEIRIKPDKENGTITILDTGIGMTKEELIDCLGTIAQSGTKKFLEALKENKTGPDNNLIGQFGVGFYSAFLVADKVTVSTKSPKSDKQYVWEGKADTSSYIIREETDPENLIVRGSKITLYLKPDDKHDYADPERVRNLVKNYSQFVSFPIYTWQEKSQTKEVEDDSAEVKEGEEKKTKTVTEKYWDWELANETKPLWMRNPKEVASEEYNEFYKKAFNEFLDPLTYSHFTTEGEVEFRSVLYIPGMAPLSTEDIMNPKTKNIRLYVKRVFISDDFDGELFPRYLSFVKGVVDSNDLPLNVSREILQESRIVRIMKRRLVRKTFDMIQGIVESENKDDYKKFWENFGKYIKLGCIEDSNNHQRIAPLLRFFSSMHDEEMISLDDYIENMTEKQNGIFYIASDSIKSARSAPFLEKLLQKDIEVLYLVDPIDEVAIQNLQTYKDKKFVDISKEDLDLGDLDEVKDREAEREYAVLCDWMKQQLGDKVAKVQISKRLSSSPCVLVAGKFGWSANMERLMKAQTLGDTSSLEFMRGRRILEINPDHPIIQDLNGACKDAPNNPEAQRAVELLYDTALISSGFAPENPAELGGKI

Protein Length: 739

Fln nts: CGTCGTGACCTTGGCTGTCACTCATTTTAGGTCAAGGCTGCCCCTCCTTATCCACTTCGCGAAGCAAAATTTCTTTTGTTTCTCATCTGCTTCGTCTCTGCGTTTCTACAGCTCATTGAGCTGATTTTAAAAATCCGAGGATTCTCAGGCTAATTTGCGGCCATTGTGGAGAGGCAGGGTGCAATTTTAGCC_-_ATGTTGACTGCTGGTGTTGCCGCTTCCACTGCTATTCATTTTCCGTCATCTCCACGCTATTCTGTCCATGGAGATGCCAAAACGTCCCACAGGAGGTTTTTTGCTTCTCCTGTGGTCTCTAAAAATGCGCTAAAGTGGAGCGCTTTAGTGGGCGGCCATGGGTTTAGCTTGGCCACTAGGAAAGGTTCGAAGTTAAGTAGCCGCAGAGTTGGTGGTGTTAGGTGCGAGGCCACTGTAGCAGAAAAGGAAACAGTAGAATCACCAGCTGAGAAATTTGAATATCAGGCAGAGGTCAGTAGGCTGCTGGATTTGATAGTTCACAGCTTATACAGCCACAAGGAAGTCTTCCTTCGGGAGCTTGTTAGTAATGCAAGTGATGCTCTAGATAAACTGCGGTTTTTAAGTGTGACCGACCCGAGTGTACTTGGAGATGGTGGTGACTTGGAGATCCGCATAAAACCAGATAAGGAGAATGGGACCATCACCATATTGGATACTGGCATCGGTATGACCAAAGAAGAATTAATTGACTGTCTTGGGACTATAGCTCAGAGCGGAACTAAAAAGTTTTTAGAGGCTTTGAAGGAAAATAAGACTGGCCCTGACAACAATTTGATTGGTCAATTTGGTGTAGGCTTCTATTCCGCTTTTCTTGTTGCTGATAAGGTTACTGTCTCAACAAAAAGCCCAAAGTCTGATAAGCAGTATGTGTGGGAAGGAAAAGCTGATACTAGCTCCTATATAATACGGGAGGAGACAGATCCAGAAAATCTTATTGTTAGAGGGAGTAAAATAACCCTTTACCTAAAGCCTGATGACAAGCATGACTATGCTGATCCAGAAAGGGTTCGTAACCTGGTTAAGAATTATTCACAGTTTGTCTCTTTCCCAATATACACATGGCAGGAAAAGTCCCAAACAAAGGAGGTTGAGGATGACAGTGCTGAAGTAAAAGAAGGGGAGGAAAAGAAAACTAAGACTGTGACAGAAAAGTATTGGGACTGGGAATTGGCAAATGAAACAAAGCCTCTCTGGATGCGTAATCCCAAAGAGGTTGCATCAGAAGAGTACAATGAGTTTTACAAGAAGGCATTCAATGAATTTCTGGATCCTTTGACATACAGTCACTTCACAACTGAGGGTGAAGTAGAGTTCAGAAGTGTCCTTTACATCCCTGGTATGGCTCCCCTTAGCACCGAGGATATAATGAATCCAAAGACTAAGAACATTCGTCTATATGTCAAGCGTGTTTTTATTTCTGATGACTTTGATGGTGAATTGTTTCCACGCTATCTGAGCTTTGTTAAAGGTGTTGTCGATTCAAATGATCTTCCTCTTAATGTATCCAGGGAGATCCTCCAAGAAAGCCGTATTGTTCGTATAATGAAGAGGCGTCTTGTACGGAAGACATTTGATATGATTCAGGGTATTGTGGAAAGTGAGAATAAAGATGATTACAAGAAATTCTGGGAGAACTTTGGAAAATATATCAAATTGGGCTGTATCGAAGACTCAAATAATCATCAACGGATTGCTCCTCTTTTACGGTTCTTCTCATCCATGCATGATGAGGAGATGATTAGCTTGGATGATTATATTGAAAATATGACTGAAAAACAAAATGGTATTTTTTATATTGCTTCAGATAGCATTAAAAGTGCCAGGAGTGCACCATTTTTGGAAAAACTTTTGCAGAAGGATATTGAGGTCCTCTATCTCGTAGACCCAATTGATGAGGTTGCTATTCAAAATCTTCAGACATACAAAGACAAAAAATTTGTTGATATTAGTAAAGAAGACCTGGACCTAGGTGATTTGGACGAAGTGAAGGACAGAGAAGCCGAGAGGGAATATGCTGTACTTTGTGACTGGATGAAGCAACAATTGGGAGATAAAGTAGCAAAAGTTCAAATATCAAAGCGCTTAAGCTCATCCCCATGTGTGCTTGTTGCAGGAAAGTTTGGGTGGTCAGCAAACATGGAAAGGCTTATGAAGGCACAGACTCTGGGTGATACGTCGAGTCTGGAGTTTATGCGTGGAAGACGAATCTTAGAGATAAACCCAGATCACCCAATCATCCAAGATCTCAATGGTGCATGCAAGGATGCTCCTAACAATCCTGAAGCTCAGAGGGCAGTTGAACTTTTGTATGATACTGCACTGATATCTAGTGGATTTGCTCCTGAGAATCCAGCTGAGTTAGGTGGAAAGATTT

Fln Alignment:

sp_v1.1_unigene10009___EATVAEKETVESPAEKFEYQAEVSRLLDLIVHSLYSHKEVFLRELVSNASDALDKLRFLSVTDPSVLGDGGD--LEIRIKPDKENGTITILDTGIGMTKEELIDCLGTIAQSGTKKFLEALKENKTGPDNNLIGQFGVGFYSAFLVADKVTVSTKSPKSDKQYVWEGKADTSSYIIREETDPENLIVRGSKITLYLKPDDKHDYADPERVRNLVKNYSQFVSFPIYTW--------------------QEKSQTKEVEDDSAXXXXXXXXXXXXXXXXYWDWELANETKPLWMRNPKEVASEEYNEFYKKAFNEFLD--PLTYSHFTTEGEVEFRSVLYIPGMAPLSTEDIMNPKTKNIRLYVKRVFISDDFDGELFPRYLSFVKGVVDSNDLPLNVSREILQESRIVRIMKRRLVRKTFDMIQGIVE---------------------SENKDDYKKFWENFGKYIKLGCIEDSNNHQRIAPLLRFFSSMHDEEMISLDDYIENMTEKQNGIFYIASDSIKSARSAPFLEKLLQKDIEVLYLVDPIDEVAIQNLQTYKDKKFVDISKEDLDLGDLDEVKDREAEREYAVLCDWMKQQL-GDKVAKVQISKRLSSSPCVLVAGKFGWSANMERLMKAQTLGDTSSLEFMRGRRILEINPDHPIIQDLNGACKDAPNNPEAQRAVELLYDTALISSGFAPENPAELGGKI
A7YAU9_______________ESESISRKTLRANAQKFEFQAEVSRLMDILINSLYSNKDIFLRELISNASDALDKIRFMALTDKNVLGEGDNTRLDIKIKLDKENKILSIRDRGIGMTKEDLIKNLGTIAKSGTSAFLEQMQK---GGDLNLIGQLGVGFYSVYLVADHVEVISKN-NDDKQYIWESKAD-GAFAVSEDTENEPL-GRGTEIRLHLK-DEASEYLDETKLKDLVKKYSEFINFPIYLWASKEVDVEVPADEESESSEEEEKSESSSDEEESEAEETESKSKTKTVKETTYEWELLNDVKAVWLRNPKEVTDEEYAKFYHSLAKDFSEEKPLAWSHFTAEGDVEFKSILFIPPKAPHDLYESYCNAKANIKLYVRRVFISDEFE-EFLPKYLGFLMGIVNSDTLPLNVSREMLQQHNSLNTIKKKLIRKALDMIRRIAEEDLDESDAKGKTDAESESEPDTEKKGKYVKFWNEFGKSIKLGIIEDASNRNHLAKLLRFESTKSGSKLASLDQYISRMKPGQKDIYYITGSSKEQLEKSPFLEKLKKKNYEVIFFTDPVDEYLMQYLMDYEDKKFQNVSKEGLKIG--KDSKDKEIKDSFKELTNWWKDVLSSENVDSVKISNRLDNTPGVVVTSKYGWSANMERIMQSQTLSDANRQSYMRGKRVLEINPKHPIIKELRERVTQNPEEENIKQTARLIYQTALMESGFILNDPKEFATSI

SNPs (tot: 14)

Position	A %	C %	G %	T %	Probability
799		83		16	0.994512
1118	33		66		0.997452
1322		75	25		0.996473
1395		33		66	1.0
1453	83			16	0.999991
1542	84	15			0.999986
1557		72		27	1.0
1579	55			44	1.0
1723	46	53			1.0
1938		12		87	0.992554
1968	50	50			1.0
1995	87		12		0.992554
2045	25		75		1.0
2130	75		25		1.0

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain