SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene10007

Length: 1374 nt

Origin of reads: Uagpf Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene10007

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Light-mediated development protein DET1, putative n=1 Tax=Ricinus communis RepID=B9S080_RICCO	-	-	62%
FL-Next	sp=Light-mediated development protein DET1; Arabidopsis thaliana (Mouse-ear cress).	-	-	59%
Blast2go	light-mediated development protein det1	-	-	73%

Source	GOs	Term	Type	Identity
Blast2go	DNA repair	GO:0006281	Biological Process	73%
Blast2go	negative regulation of photomorphogenesis	GO:0010100	Biological Process	73%
Blast2go	red or far-red light signaling pathway	GO:0010017	Biological Process	73%
Blast2go	protein binding	GO:0005515	Molecular Function	73%
Blast2go	mitochondrion	GO:0005739	Cellular Component	73%
Blast2go	nucleus	GO:0005634	Cellular Component	73%

Source	InterPros	Term	Type	e value	Identity
Blast2go	De-etiolated protein 1, Det1	IPR019138	-	0.0	73%

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: sp_plants

Fln subject: P48732

Fln msg: Unexpected stop codon in the beginning of your sequence, your sequence is shorter than subject: 375 - 543

Fln protein: QVVRWRSHG*TDIPQ*LHELGCHKMGVFLYDDLLSIMSIRYQKIHILQIREAGAFVDVRAIGTYCREDDELILNSQVQRSSNQVNDTDQEASSDQAENGIQQSQQIQCGTFLGGIKQRLLSFIFRRIWNNDIDPVLRAKHLKRFYYHFQHYIDLVMWKAQFLDRHHLLIKFGSVDGGMSRTSDCQTAFFAVYNIETTELLAFYQNNSEELFCLLEQYCDEFRAPSQYPLYTRFISSYNNNIHAREQLRKQKATCIESKTSSYLQFVMKTLACIPFNSQSQSPSPYFDQSLFHFDEKLISATDKHRQCMEHPIKFISKRYPNTLKFKINPGLENGAGDGRTKRVASFIFHPVLPFAISIQQAFMQPSVVNIHLRR*

Protein Length: 376

Fln nts: GTCAGGTTGTCAGATGGAGAAGTCATGGATAAACGGATATTCCCCAATGACTTCATGAACTTGGCTGTCACAAAATGGGAGTCTTCCTATATGATGATTTATTGTCAATTATGTCTATTCGTTACCAGAAAATTCATATTCTACAAATTCGAGAGGCCGGGGCTTTTGTGGATGTGCGAGCAATTGGAACATATTGTAGAGAAGATGATGAGCTTATTCTCAACTCTCAGGTTCAGAGAAGTTCCAATCAAGTAAATGATACAGATCAAGAAGCATCATCAGACCAGGCTGAAAATGGAATTCAGCAAAGTCAACAAATCCAGTGTGGCACATTTTTAGGTGGTATCAAGCAACGCTTACTTTCGTTTATTTTTCGAAGGATATGGAACAATGATATAGATCCTGTGCTGAGGGCTAAGCATTTGAAGAGGTTCTATTATCATTTCCAGCATTATATTGACCTTGTAATGTGGAAGGCACAATTCTTAGACCGCCATCATCTTCTTATCAAGTTTGGTAGTGTAGATGGGGGGATGTCAAGAACCTCAGATTGTCAGACTGCATTTTTTGCTGTATACAATATAGAGACGACTGAACTACTTGCTTTTTACCAGAATAATTCAGAGGAGTTATTTTGCTTGTTGGAGCAGTATTGCGATGAATTCCGTGCACCATCACAGTATCCCTTGTACACAAGGTTTATATCTTCGTACAACAATAATATCCATGCAAGAGAGCAATTAAGAAAGCAAAAGGCTACATGCATTGAAAGCAAAACTAGTAGTTATTTACAGTTTGTGATGAAGACGCTGGCATGTATTCCTTTCAATTCTCAGTCACAGAGCCCTTCTCCTTATTTTGATCAATCTCTTTTTCACTTTGATGAGAAGTTGATTTCAGCAACAGATAAACATAGACAATGTATGGAGCACCCAATCAAATTTATATCCAAGCGATACCCAAATACCTTGAAGTTTAAGATCAATCCAGGATTGGAAAATGGTGCTGGCGATGGACGCACAAAACGAGTTGCATCATTTATTTTCCACCCAGTTCTCCCCTTTGCGATATCAATTCAACAAGCATTTATGCAACCGTCGGTGGTCAATATTCATCTACGAAGATAA___ATCATATGCCTAATTTGCATAGAAGGTTCAAATATCAAGAGTTAGTTATGCTTACAAGGCATGGGAGTGGATACAAGCTTCATCTATGGACATGCTTCATATTGTTATAATTCTTACCGAGTGTGTCGTCACTCATTGTTGTATTATTACTATGAATAGTGCTACTAAATTTTCCATCATGGTGCAATAATGACAACTAGAAGGTTGTATTTTGTCATTTGTTATTCGAAATGAAAATTCTCTTTCC

Fln Alignment:

sp_v1.1_unigene10007___HKMGVFLYDDLLSIMSIRYQKIHILQIREAGAFVDVRAIGTYCREDDELILNSQVQRSSNQVNDTDQEASS----DQAENGIQQSQQIQCGT--FLGGIKQRLLSFIFRRIWNNDIDPVLRAKHLKR-FYYHFQHYIDLVMWKAQFLDRHHLLIKFGSVDGGMSRTSDCQTAFFAVYNIETTELLAFYQNNSEELFCLLEQYCDEFRAPSQYPLYTRFISSYNNNIHAREQLRKQKATCIESKTSSYLQFVMKTLACIPFNSQSQSPSPYFDQSLFHFDEKLISATDKHRQCMEHPIKFISKRYPNTLKFKINPGLENGAGDGRTKRVASFIFHPVLPFAISIQQA-FMQPSVVNIH
P48732_______________HNMGVFLYDDLLAILSLRYQRIHLLQIRDSGHLVDARAIGYFCREDDELFLNSSSQAMMSQDKSKQQSLSGSKEDDTGENGLRHSLSQPSGSNSFLSGVKQRLLSFIFREIWNEESDNVMRVQSLKKKFYFHFQDYVDLIIWKVQFLDRQHLLIKFGSVDGGVTRSADHHPAFFAVYNMETTDIVAFYQNSAEDLYQLFEQFSDHFTVSSSTP-FMNFVTSHSNNVYALEQLKYTK-----NKSNSFSQFVKKMLLSLPFSCQSQSPSPYFDQSLFRFDEKLISAADRHRQSSDNPIKFISRRQPQTLKFKIKPGPECGTADGRSKKICSFLFHPHLPLAISIQQTLFMPPSVVNIH

SNPs (tot: 67)

Position	A %	C %	G %	T %	Probability
396	83		16		0.994512
397			16	83	0.994512
398	83		16		0.994512
462		85	14		0.993533
464		14		85	0.993533
468	85	14			0.993533
469		14		85	0.993533
470			85	14	0.993533
474	85	14			0.993533
475	85			14	0.993533
477			85	14	0.993533
481	85			14	0.993533
482	85	14			0.993533
483	14			85	0.993533
535		16		83	0.994512
539	83		16		0.994512
540	83			16	0.994512
548	83			16	0.994512
550	83		16		0.994512
551		16		83	0.994512
756	20		80		0.995493
759	60		40		1.0
797		16		83	0.994512
800		16	83		0.994512
801	83		16		0.994512
805	83	16			0.994512
806			83	16	0.994512
807	83			16	0.994512
808		83	16		0.994512
813			83	16	0.994512
852		81		18	0.999994
854			18	81	0.999994
855			18	81	0.999994
954	30	70			1.0
991	12		87		0.992554
998	62	37			1.0
999	87		12		0.992554
1000	50	12		25	1.0
1001	12			87	0.992554
1006	12	87			0.992554
1008	37		62		1.0
1010		87		12	0.992554
1017		75		25	1.0
1028	12		87		0.992554
1035		70	10	20	0.999998
1039	90	10			0.90298
1042			10	90	0.90298
1043	90		10		0.90298
1044		10		90	0.90298
1045		10		90	0.90298
1046			10	90	0.90298
1052		88		11	0.923564
1055	22		77		0.999999
1060		88		11	0.923564
1069	22		77		0.999999
1072	88			11	0.923564
1076	88		11		0.923564
1099	12		87		0.992554
1102	12		87		0.992554
1105	12		87		0.992554
1122			87	12	0.992554
1132	11	88			0.923564
1143		12		87	0.992554
1145		12		87	0.992554
1281	50		50		1.0
1303		80		20	0.995493
1306		20		80	0.995493

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain