SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene10006

Length: 1009 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v1.1_unigene10006 (antisense)

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	asparagine synthase (glutamine-hydrolyzing)	-	-	71%
FL-Next	tr=Putative uncharacterized protein; Vitis vinifera (Grape).	-	-	67%
Blast2go	asparagine synthetase domain-containing protein 1	-	-	72%

Source	ECs	Term	Type	e value	Identity
Blast2go	Asparagine synthase (glutamine-hydrolyzing).	EC:6.3.5.4	-	0.0	72%

Source	KEGGs	Term	Identity
Blast2go	Alanine, aspartate and glutamate metabolism	00250	72%
Blast2go	Nitrogen metabolism	00910	72%
Blast2go	Metabolic pathways	01100	72%
Blast2go	Biosynthesis of secondary metabolites	01110	72%

Source	GOs	Term	Type	Identity
Blast2go	asparagine biosynthetic process	GO:0006529	Biological Process	72%
Blast2go	asparagine synthase (glutamine-hydrolyzing) activity	GO:0004066	Molecular Function	72%
Blast2go	cytoplasmic membrane-bounded vesicle	GO:0016023	Cellular Component	72%
Blast2go	mitochondrion	GO:0005739	Cellular Component	72%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Asparagine synthase	IPR001962	-	0.0	72%
Blast2go	Rossmann-like alpha/beta/alpha sandwich fold	IPR014729	-	0.0	72%

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: tr_plants

Fln subject: D7T9X6

Fln msg: your sequence is shorter than subject: 329 - 645

Fln protein: LKQAVMRHACQSQSNKIIEKEERIAKCAPIAVLFSGGLDSMILAALLDQCLAPNCEIDLLNVSFDGPHAPDRISAKAGVIELQRIAPLRRWRLVEIDADPSNLQPETKYLTSIIHPAKTYMDLNIGTALWLAACGEGWVEEVELLQGEDDCCLYESHSLSTRHNRFKRKKYRSEAKILLIGSGADEQCAGYGRHRTKFRLGGWVALQEEMKIDIQRIWKRNLGRDDRCIADHGKEARFPFLDEDVMSTLLDIPLWEIADLDKPAGRGDKKILRQVARLLGLEGASIIPKRAIQFGSRIARESNRRNFGSNRAANQASAGSTVIHCLRE*

Protein Length: 330

Fln nts: CTTAAACAAGCTGTTATGCGTCATGCATGTCAAAGCCAATCTAACAAGATAATAGAAAAGGAGGAAAGGATAGCAAAATGTGCACCGATTGCTGTTCTCTTCTCTGGTGGATTGGACTCAATGATATTAGCAGCTTTGTTGGACCAGTGCCTTGCTCCCAATTGTGAGATAGATCTGTTGAATGTTAGCTTTGACGGTCCTCATGCACCAGATAGAATTTCAGCAAAAGCAGGAGTAATTGAACTTCAAAGAATAGCTCCATTGAGAAGATGGCGTTTGGTTGAAATCGATGCAGATCCTTCCAATTTGCAGCCAGAGACAAAATATTTGACTTCAATCATCCACCCAGCAAAGACATATATGGATCTGAATATTGGAACTGCATTATGGCTAGCAGCTTGTGGTGAAGGATGGGTGGAGGAAGTTGAACTCCTTCAGGGAGAAGATGACTGTTGCCTTTATGAGTCTCATTCACTCTCTACTAGACATAACAGATTCAAGCGCAAAAAGTATAGGTCAGAGGCTAAAATCTTGTTGATTGGTTCTGGAGCAGATGAGCAATGTGCTGGATATGGAAGGCACAGGACAAAATTTAGACTAGGAGGGTGGGTTGCATTGCAAGAAGAGATGAAGATTGATATTCAAAGGATTTGGAAAAGAAACCTTGGAAGAGATGATAGATGTATAGCTGATCACGGCAAGGAGGCCAGGTTCCCATTCTTAGATGAGGATGTTATGAGCACTCTTCTGGATATTCCTCTCTGGGAAATTGCAGACCTTGATAAACCTGCGGGCCGGGGTGATAAGAAGATTCTTAGACAGGTTGCACGGTTATTGGGATTAGAAGGAGCATCTATTATTCCAAAACGAGCTATACAGTTTGGTAGTAGAATAGCAAGGGAGTCCAATCGGAGAAACTTTGGTAGCAACCGTGCAGCAAACCAAGCGTCTGCAGGGAGTACAGTGATCCATTGTTTGAGAGAATGA___GTTAAATGAACAGATGCAATCA

Fln Alignment:

sp_v1.1_unigene10006___LKQAVMRHACQSQSNKIIEKEERIAKCAPIAVLFSGGLDSMILAALLDQCLAPNCEIDLLNVSFDGPHAPDRISAKAGVIELQRIAPLRRWRLVEIDADPSNLQPETKYLTSIIHPAKTYMDLNIGTALWLAACGEGWVEEVELLQGEDDCCLYESHSLSTRHNRFKRKKYRSEAKILLIGSGADEQCAGYGRHRTKFRLGGWVALQEEMKIDIQRIWKRNLGRDDRCIADHGKEARFPFLDEDVMSTLLDIPLWEIADLDKPAGRGDKKILRQVARLLGLEGASIIPKRAIQFGSRIARESNRRNFGSNRAANQASAGSTVIH
D7T9X6_______________LRESMMRRTTQSAIFPAVTCDLQQEELVPVAILFSGGLDSMILAALLDECLQPSYGIDLLNVSFDGQSAPDRISAKAGLKELQRISPLRRWKLVEVDADLSKLTQETKHVMSLINPAKTYMDLNIGIALWLAAGGDGWVHE-EI--GEID------------NDNYQRVKYKSKARILLVGSGADEQCAGYGRHKTKYRSGSWLGLNEEMKLDMQRIWKRNLGRDDRCIADNGKEARFPFLDEDVIRTLLDIPLWEVANLDQPSGTGDKKILREVAQMLGIYEAATLPKRAIQFGSRIARESNRKNFGSNRAANQASAGSVVIY

SNPs (tot: 5)

Position	A %	C %	G %	T %	Probability
542		25		75	0.996473
554	75		25		0.996473
602	75	25			0.996473
615	75		25		0.996473
836		80		20	0.995493

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain