SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene10004

Length: 2066 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

>sp_v1.1_unigene10004
ATGGGGTGTTTAAAAAGCCGAAGGGCTCTCACTCATGGGGATTCCGCCAGCACACCATCTTTCGTCCGTCATTCAACCTCTATAGATCGGCTCTCTCCAGGTGCCAGGTTCGCTTCCTCTGCATGTTTTTTAGACCAATCGTTTCCCGACTTACGGAATTTGGCTTAAAATTAGGCCCTGCAAAAGTTTTATAGCTTCCTCTGGGGTAACGGTAGCTTACAGACATGAGTAGCAATGGCAACGGGCAAAAACAAGGCNGNNNNTATTTTTCGCCGCCTTCGCCTCGGGCCTCTCTAATTTCGGGAGCGCGATGCACAAATCTGTTAACAGCTTCATGGGATATGAGGGTTTAGAAGTAGTCAATCCGGAAGGCGGTCAGGATGATGCAGAGGAGGAAGCTCATCGAGGTAGATGGCGGAAAGAGGACCAGGATAGTTATTGGAAAATGATGCAAAAATATATCGGAGCAGATGTCACCTCCATGGTGACACTTCCAGTCATTATCTTTGAGCCTATGACGATGCTTCAGAAGAGTGCTGAGTTAATGGAGTACACTTATTTGCTTGACATGGCAGATGAGTGTGAAGACCCCTATCTCAAGATGGCTTATGCAGCATCATGGGCAATTTCTGTCTATCCTGCATACCAGAGGACTTGGAAGCCCTTTAACCCTATTCTTGGAGAAACTTATGAAATGGTCAATCATGGAGGGATCACATTTATCGCAGAGCAGGTCAGCCACCATCCTCCAATGGGCTCAGCCTATGCAGAAAATGAACATTTTACATACAGTCTGTCCTCAAAAGTAAAAACCAAGTTTCTTGGCAACTCTGTGGATATTTACCCACTTGGAAGGACTACGTGTGGTGCTAAAGAAATCTGGAGAGGTTCTAGATTTGGTGCCGCCTCCATCTAAAGTTCATAACCTAATTTTTGGACGAACTTGGATTGATTCACCTGGTGAGATGGTGCTGACAAATTTGACTACGGGAGATAAAGTGGTGCTGTACTTTCAGCCATGTGGCTGGTTTGGAGCTGGTCGCTATGAAGTGGATGGGTATGTATACGATTCCAAGGAAGAACCTAAGATATTGATGACAGGAAAATGGAATAGATCGATGACTTACCAGCCTTGTGATGCTGAAGGGGAGCCACTTCCTGGCACAGAGCTTAAAGAGGTATGGAGGGTCGCAGATCTTCCAAAGAACGACAAATTTCAATATACATATTTTGCACACAAAATTAACAGTTTTGATACGGCACCAAAGAAGCTGCTTGCATCAGATTCTCGTCTTCGTCCTGACCGTAGTGCACTAGAGATGGGAGATCTGTCCAAGGCTGGAGCTGAAAAATCCAATCTTGAGGAAAGACAACGGGCAGAAAAGAGATGTAGAGAGGAAAAAAATCAACCTTTCACTCCTAGGTGGTTCACATTAACTGGAGAAGTTGCCACTACGCCTTGGGGTGATTTGGAAGTGTATGAATATAATGGTAAATATCAAGAACATCGTGCTTCAGTCGATGACTCTAATTTTGATGACGGAACAGATTCAAAATCTATGGAGTTCAACCCATGGCAGTATGGAAACATTGAGTCTGGGAGCAACAAAAAGGTTGAATGATATCCTCGTGCTCGAAAATAGCATGATCTCTTAATTCTTTCCTTGTAATGTTATGATTCTGATGGAATTTTGCTGCTTTTCTCTTGTGGGGTTTATGTCATCTTCATTTTGCTAATGTATTTTGAACTCAAGTTAACAGACGATGGAAACAATCTTCCGTGCCATGAGTTGAATGAAATTTTAAAAGATAATGGAAGCTGCCTCCATGTGATCAGAAACTTGGCATATAATTGATATCATGTACCTATGTTTTTGTTTAGGGAAGAAAGATAGAACTGCCTATTTTGATCAAATTGTAAATTATATTTTTCATCAGAATTTTTGTGAAGTCTTTTCCAGAGCTTCTGGATTAAGGACTATACTCAAAATATTTGGGATTTCATCTTTACCCCACGGAAGTTGGATATTCTTAACATGGTAAAATCCCTGACTTGTTATTCCTCC

Ace file of the UniGene sp_v1.1_unigene10004

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Oxysterol-binding protein n=3 Tax=Arabidopsis RepID=Q93Y40_ARATH	-	-	77%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	92%
Blast2go	oxysterol-binding protein	-	-	85%

Source	GOs	Term	Type	e value	Identity
Blast2go	steroid metabolic process	GO:0008202	Biological Process	0.0	85%
Blast2go	oxysterol binding	GO:0008142	Molecular Function	0.0	85%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Oxysterol-binding protein	IPR000648	-	0.0	85%
Blast2go	Oxysterol-binding protein, conserved site	IPR018494	-	0.0	85%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NNF6

Fln msg: your sequence is longer than subject: 219 - 175

Fln protein: MVLTNLTTGDKVVLYFQPCGWFGAGRYEVDGYVYDSKEEPKILMTGKWNRSMTYQPCDAEGEPLPGTELKEVWRVADLPKNDKFQYTYFAHKINSFDTAPKKLLASDSRLRPDRSALEMGDLSKAGAEKSNLEERQRAEKRCREEKNQPFTPRWFTLTGEVATTPWGDLEVYEYNGKYQEHRASVDDSNFDDGTDSKSMEFNPWQYGNIESGSNKKVE*

Protein Length: 220

Fln nts: ATGGGGTGTTTAAAAAGCCGAAGGGCTCTCACTCATGGGGATTCCGCCAGCACACCATCTTTCGTCCGTCATTCAACCTCTATAGATCGGCTCTCTCCAGGTGCCAGGTTCGCTTCCTCTGCATGTTTTTTAGACCAATCGTTTCCCGACTTACGGAATTTGGCTTAAAATTAGGCCCTGCAAAAGTTTTATAGCTTCCTCTGGGGTAACGGTAGCTTACAGACATGAGTAGCAATGGCAACGGGCAAAAACAAGGCaGctgaTATTTTTCGCCGCCTTCGCCTCGGGCCTCTCTAATTTCGGGAGCGCGATGCACAAATCTGTTAACAGCTTCATGGGATATGAGGGTTTAGAAGTAGTCAATCCGGAAGGCGGTCAGGATGATGCAGAGGAGGAAGCTCATCGAGGTAGATGGCGGAAAGAGGACCAGGATAGTTATTGGAAAATGATGCAAAAATATATCGGAGCAGATGTCACCTCCATGGTGACACTTCCAGTCATTATCTTTGAGCCTATGACGATGCTTCAGAAGAGTGCTGAGTTAATGGAGTACACTTATTTGCTTGACATGGCAGATGAGTGTGAAGACCCCTATCTCAAGATGGCTTATGCAGCATCATGGGCAATTTCTGTCTATCCTGCATACCAGAGGACTTGGAAGCCCTTTAACCCTATTCTTGGAGAAACTTATGAAATGGTCAATCATGGAGGGATCACATTTATCGCAGAGCAGGTCAGCCACCATCCTCCAATGGGCTCAGCCTATGCAGAAAATGAACATTTTACATACAGTCTGTCCTCAAAAGTAAAAACCAAGTTTCTTGGCAACTCTGTGGATATTTACCCACTTGGAAGGACTACGTGTGGTGCTAAAGAAATCTGGAGAGGTTCTAGATTTGGTGCCGCCTCCATCTAAAGTTCATAACCTAATTTTTGGACGAACTTGGATTGATTCACCTGGTGAG_-_ATGGTGCTGACAAATTTGACTACGGGAGATAAAGTGGTGCTGTACTTTCAGCCATGTGGCTGGTTTGGAGCTGGTCGCTATGAAGTGGATGGGTATGTATACGATTCCAAGGAAGAACCTAAGATATTGATGACAGGAAAATGGAATAGATCGATGACTTACCAGCCTTGTGATGCTGAAGGGGAGCCACTTCCTGGCACAGAGCTTAAAGAGGTATGGAGGGTCGCAGATCTTCCAAAGAACGACAAATTTCAATATACATATTTTGCACACAAAATTAACAGTTTTGATACGGCACCAAAGAAGCTGCTTGCATCAGATTCTCGTCTTCGTCCTGACCGTAGTGCACTAGAGATGGGAGATCTGTCCAAGGCTGGAGCTGAAAAATCCAATCTTGAGGAAAGACAACGGGCAGAAAAGAGATGTAGAGAGGAAAAAAATCAACCTTTCACTCCTAGGTGGTTCACATTAACTGGAGAAGTTGCCACTACGCCTTGGGGTGATTTGGAAGTGTATGAATATAATGGTAAATATCAAGAACATCGTGCTTCAGTCGATGACTCTAATTTTGATGACGGAACAGATTCAAAATCTATGGAGTTCAACCCATGGCAGTATGGAAACATTGAGTCTGGGAGCAACAAAAAGGTTGAATGA___TATCCTCGTGCTCGAAAATAGCATGATCTCTTAATTCTTTCCTTGTAATGTTATGATTCTGATGGAATTTTGCTGCTTTTCTCTTGTGGGGTTTATGTCATCTTCATTTTGCTAATGTATTTTGAACTCAAGTTAACAGACGATGGAAACAATCTTCCGTGCCATGAGTTGAATGAAATTTTAAAAGATAATGGAAGCTGCCTCCATGTGATCAGAAACTTGGCATATAATTGATATCATGTACCTATGTTTTTGTTTAGGGAAGAAAGATAGAACTGCCTATTTTGATCAAATTGTAAATTATATTTTTCATCAGAATTTTTGTGAAGTCTTTTCCAGAGCTTCTGGATTAAGGACTATACTCAAAATATTTGGGATTTCATCTTTACCCCACGGAAGTTGGATATTCTTAACATGGTAAAATCCCTGACTTGTTATTCCTCC

Fln Alignment:

sp_v1.1_unigene10004___MTGKWNRSMTYQPCDAEGEPLPGTELKEVWRVADLPKNDKFQYTYFAHKINSFDTAPKKLLASDSRLRPDRSALEMGDLSKAGAEKSNLEERQRAEKRCREEKNQPFTPRWFTLTGEVATTPWGDLEVYEYNGKYQEHRASVDDSNFDDGTDSKSMEFNPWQYGNIESGSNKKVE
A9NNF6_______________MTGKWNRSMSYQPCDAEGEPLPGTELKEVWRVADVPKNDKFQYTHFAHKLNSFATAPKKLLASDSRLRPDRYALELGDLSKAGAEKSNLEEKQRAEKRCREENNQSFTPRWFTLTGEVATTPWGDLEVYEYNGKYSEHRASVDDSNFDDGADSKSIEFNPWQYGNIEVGSNKKVE

SNPs (tot: 18)

Position	A %	C %	G %	T %	Probability
153	75		25		0.996473
258	66			33	0.997452
356	85		14		0.993533
358			14	85	0.993533
809	71		28		1.0
871		75		25	0.996473
1044		83	16		0.999991
1380	91			8	0.999807
1381			91	8	0.999807
1382	91	8			0.999807
1383	90		9		0.999842
1384	90	9			0.999842
1387	90			9	0.999872
1394		10	90		0.999898
1399		12	87		0.999964
1400	80	13			0.999961
2042		12		87	0.992554
2065	33			66	0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain