SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene9985

Length: 1701 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene9985

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	CC-NBS-LRR resistance-like protein n=1 Tax=Pinus lambertiana RepID=Q1L6F3_PINLA	-	-	53%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	53%
Blast2go	leucine rich repeat family expressed	-	-	69%

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: C0PQB7

Fln msg: your sequence is shorter than subject: 345 - 726

Fln protein: PYGCSGELSLIQHDVLRDLAIYWTEQEPIIERRKRFIMPQKADSIRKMWKKHAGRDFSAEIVSFHTGSMEEKDWCQMNFPNAKALILNFSASEYFLPPFMQSMDKLKVLIIVNHNSKRATLKGISVLSSLTRLKVIRLERVIVPPLQEYCQSWQKLEKLSLVLCEGCGNTTGLHMGAYLNFPRLLELAIDHCSDLRELPTSICSLTTLKRLSVTNCHDLQKLSEEVGNLSSLQMLKLYACPSLKELPYSVCKLRQLQFLDISLCGHLKQLPDQLGQLSSLKELDMRECSRVKQLPKSASDLRSLVHVICDEKIRHQWSSIKVSTIPSLRVEVAEEHFHLDWLED*

Protein Length: 346

Fln nts: CCTTATGGCTGTAGCGGTGAGCTTTCCTTAATTCAGCATGATGTATTGCGAGACTTGGCTATCTATTGGACCGAGCAGGAGCCTATAATTGAAAGACGCAAAAGGTTTATCATGCCTCAGAAAGCTGATTCTATTCGTAAAATGTGGAAGAAGCATGCAGGGCGTGATTTCAGTGCTGAGATTGTTTCCTTCCACACAGGTTCGATGGAGGAGAAGGATTGGTGTCAGATGAACTTTCCTAATGCCAAGGCTCTTATCTTAAACTTTTCTGCAAGTGAATACTTTCTTCCACCATTCATGCAATCAATGGATAAATTAAAGGTTCTCATAATTGTAAATCACAATTCTAAGCGGGCTACTCTCAAAGGTATATCAGTCCTCTCTTCATTAACTCGGCTGAAAGTTATTCGGTTAGAGAGAGTAATTGTTCCTCCCCTCCAAGAGTACTGCCAGTCCTGGCAAAAACTAGAGAAGTTATCCTTGGTTCTATGTGAGGGTTGTGGGAATACAACAGGATTACATATGGGGGCTTATTTAAATTTCCCCCGTCTTCTTGAGTTAGCTATCGATCACTGTAGTGATCTTAGGGAACTTCCTACGAGTATTTGCAGTTTGACTACCCTTAAACGGTTGTCTGTCACAAATTGCCATGATCTTCAGAAGTTATCGGAAGAGGTAGGTAATCTCAGCTCATTGCAGATGCTCAAATTGTATGCATGCCCAAGTTTAAAAGAACTACCATATTCAGTTTGCAAGCTAAGACAACTACAATTCCTTGATATTTCACTTTGTGGACACCTAAAACAACTCCCAGATCAATTGGGCCAATTATCTAGTTTAAAAGAACTTGATATGAGGGAGTGCTCTCGTGTGAAGCAACTTCCTAAATCGGCTAGTGACTTAAGGTCTCTGGTTCATGTCATCTGTGATGAGAAGATTCGGCATCAGTGGTCATCTATCAAGGTCTCTACCATTCCTAGCCTCCGCGTGGAAGTTGCAGAAGAACACTTCCATCTGGATTGGCTTGAGGATTGA___TTGATTCGAAATATATAGGATGGCACTTGAAGGGATTCTTTCTCTATGCAGATCTCCTGAGCCAAGGCGAAAACCTTGGTGTCTAATAAACAGAGAGTTACATTGCAGCCATGAACATTTCTGGTTGAAATTTGGAAAATAACAAAATATCAGCATAATGGGGCTATGTGGCACAGTTTGTAGAAAATGTACTCAACAAGGAGCTCCAGGAGGTCAACCCTACACAGTTGTTCGCAGTGACAGAAATAATTTATTGTGTGCTTGGAAGACACTATCCTGAGGCATTGAGACTTTGTCATTTTGATTTGGTACAAAGTATAACTTACTTTTATACATGATATTTTCCCGTCTAATCATGTTTACAGTGCATAATATGATCAATTTTGTCCAGCATCCGTGAACCTGGTAAACTTCCTGCAATTACTGAAATTCTGATGGCTTGGGCAGTAATAAACAGCATGACAACTTGACTTAACAAAGCCTTTTTATCTCTTGACAACTTTGCTTTTTTGCTCTTGTCCAATAAGTGAATTAAATTCATTAATGCCTTAAAGTGATGTCAGCTCTTTGGAAAGCAAGAGTAAAAAGATTATGACACATTTGGAAAAGGACAACTGTTATGCATGAAATACTACAAGATGGGTACAACAGGTACATGCATCCAGC

Fln Alignment:

sp_v1.1_unigene9985___YGCSGELSLIQHDVLRDLAIYWTEQEPIIERRKRFIMPQKADSIRKMWKKHAGRDFSAEIVSFHTGSMEEKDWCQMNFPNAKALILNFSASEYFLPPFMQSMDKLKVLIIVNHNSKRATLKGISVLSSLTRLKVIRLERVIVPPLQEYCQSWQKLEKLSLVLCEGCGNTTGLHMG-AYLNFPRLLELAIDHCSDLRELPTSICSLTTLKRLSVTNCHDLQKLSEEVGNLSSLQMLKLYACPSLKELPYSVCKLRQLQFLDISLCGHLKQLPDQLGQLSSLKELDMRECSRVKQLPKSASDLRSLVHVICDEKIRHQWSSIKVSTIPSLRVEVAEEHFHLDWLE
C0PQB7______________YGSASELYFSQHDVMRDLALHLASRDRIVQR-KRLFMPKKEESLPGKWEVLKDQAFDAQVVSIHTGAMEEDQWCEMNFRQAEALVLNFSASNYFLPSFLSSMTKLKVLIVLNYGSKRATVNGLLAPSSLTQLRTIRLERLNVPSLQEHSRAFQSLEKLSLSLCEGLGNMSRFNSTQSSLKLPIMLDFNLDHCCDLEELPPGICDMSSVENWSITNCHLLQKLPDDMGKLCSLRMLRLSACLGLKELPDSIGKLGKLEYLDISLCECLKELPEEIGQLKKLQVLDMRECSRLRKLPKSVEGLKSLKHVICDEKIGQKWLRVKSSVLKELRVEIVDAHFSLDWLD

SNPs (tot: 32)

Position	A %	C %	G %	T %	Probability
721		80	20		0.995493
722		80		20	0.995493
723	80		20		0.995493
725		20	80		0.995493
726		20		80	0.995493
729	80		20		0.995493
730	80		20		0.995493
731	80	20			0.995493
732	80			20	0.995493
735	80	20			0.995493
741	20	80			0.995493
861			85	14	0.993533
862		14	85		0.993533
1141	10			90	0.90298
1144		90	10		0.90298
1145	90		10		0.90298
1207		42		57	1.0
1260	85		14		0.993533
1272	14		85		0.993533
1358	88		11		0.923564
1359	88			11	0.923564
1360	88	11			0.923564
1364			11	88	0.923564
1366	88	11			0.923564
1370	88		11		0.923564
1371		88	11		0.923564
1372		12		87	0.992554
1374			12	87	0.992554
1377		12		87	0.992554
1380	75		12		0.975346
1382		12	87		0.992554
1458			25	75	0.996473

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain