SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene9983

Length: 996 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v1.1_unigene9983 (antisense)

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Unassigned protein	-	-	-
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	84%
Blast2go	uncharacterized protein	-	-	74%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9P080

Fln msg: Overlapping hits, possible frame ERROR between 268 and 262, atg_distance in limit (1-15): atg_distance = 1,

Fln protein: MAWRCSLSHLKRSWRGQQHNISLSNIAGVSSPVESADKQFTTLGKRATSFVLLGLTGAFALSAFDDFAIYYNCSSKAIEKVTNNAKxxxxALGEPIMRGQWYNATLSVAHHKNSVSCTFPVVGSQGSGILQLKAVRHGDNNWFTFLGFQEWEILFLEALVHTRANEESERTFRINLMTDYNLPDNKDCKECKLSTASKT*

Protein Length: 201

Fln nts: G_-_ATGGCGTGGAGGTGCAGTCTCTCTCATTTGAAGAGATCATGGAGAGGGCAGCAACACAACATTTCTCTCTCTAACATTGCCGGGGTGTCATCTCCAGTTGAGTCAGCTGACAAACAGTTTACCACACTTGGGAAGAGAGCAACGTCCTTTGTATTACTTGGCCTCACTGGAGCTTTTGCTTTGAGTGCTTTTGATGACTTCGCAATCTATTATAATTGTAGTAGCAAGGCTATAGAGAAAGTAACCAATAATGCCAAGxxxxxxxxxxxxGCCTTGGGAGAGCCAATCATGAGGGGCCAGTGGTATAATGCAACCTTGTCCGTGGCACACCATAAAAATTCTGTATCATGCACATTTCCTGTTGTTGGTTCACAAGGAAGTGGAATTCTTCAGTTGAAGGCTGTTCGTCATGGAGATAATAACTGGTTTACATTCCTCGGATTCCAAGAATGGGAAATACTTTTCTTGGAAGCACTTGTGCATACTCGTGCAAATGAAGAAAGCGAGCGTACATTTCGGATCAATCTCATGACAGATTATAATTTACCAGACAACAAGGATTGTAAGGAATGTAAGCTATCAACTGCATCAAAGACATGA___TTAGGATGTATAGAAGAAATGCTTGAGAAATATGAAATGACTTCGGATTTGGAGCGATGTGGTTTGATAATTGTCATTAAGTGCACACTGGAAAAGTGCTAAATATTGCCCATTAATTAGATAACTCCATAATTCTCAGTTTGTTGTATTGGTGGCTATTTTTGGTAGAAATTTATTGGCTGGTATTGCACCATGCCTACGGATAAAGATTTAGTAATGGTTGTATGTTTGATTGAGAAGAGGTCTACAAATTTTGTTGCTGAATAAAGCATATCATTCTTGCAATATTGTGAGCTAATGTTGAAGGAGAACATCTCCGTTAAAAGGACACTTGCATACTTATTTATTGATTAATATGTGAAATTTTTTGGCAATTAAGATGCTCTTAAAACTTTG

Fln Alignment:

sp_v1.1_unigene9983___MAWRCSLSHLKRSWRGQQHNISLSNIAGVSSPVESADKQFTTLGKRATSFVLLGLTGAFALSAFDDFAIYYNCSSKAIEKVTNNAKxxxALGEPIMRGQWYNATLSVAHHKNSVSCTFPVVGSQGSGILQLKAVRHGDNNWFTFLGFQEWEILFLEALVHTRANEESERTFRINLMTDYNLPDNKDCKECKLSTA
A9P080______________MAWRSSLSHLMRSWRGQQYNISLSTIAGVSSPVESADKRFTTLGKKTTSFILLGLTGAFALSAFDDFTIYYNCSSKAIEKVINNVSxxxALGEPITRGQWYNATLSVAHHKNSVSCTFPVVGSQGSGILQLKAVRNGENNWFTFLGSQEWEILLLEALVHTGANEESKRTFRINLMTDSDFPENKDCKECKLSTS

SNPs (tot: 41)

Position	A %	C %	G %	T %	Probability
151		25		75	0.996473
152	75	25			0.996473
153		25	75		0.996473
155		75		25	0.996473
156	33	66			1.0
343	80		20		0.995493
359		80	20		0.995493
361		20		80	0.995493
362	20			80	0.995493
363			20	80	0.995493
365	80	20			0.995493
366	20			80	0.995493
368			20	80	0.995493
369			20	80	0.995493
372	20			80	0.995493
375	80	20			0.995493
403		85		14	0.993533
601	16			83	0.999991
619			6	93	0.999153
636	93		6		0.999453
638		82	13	3	1.0
643	85	14			1.0
645			3	82	1.0
648		14	82		1.0
651	16	4		80	1.0
653	90		9		0.999872
660	88	11			0.999952
661			12	81	0.999943
705		81		18	0.999994
712	90	10			0.90298
713		20		80	0.999996
714	20			80	0.999996
715	10		90		0.90298
716		10	90		0.90298
717		90	10		0.90298
718			10	90	0.90298
721	10	90			0.90298
740		40	60		1.0
744			20	40	1.0
833	40		60		1.0
857		60		40	1.0

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain