SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene9981

Length: 986 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene9981

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	RNA polymerase II transcriptional coactivator KIWI n=4 Tax=Arabidopsis RepID=KIWI_ARATH	-	-	8.0e-26	55%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	80%
Blast2go	transcriptional co-activator	-	-	1.04215e-41	71%

Source	GOs	Term	Type	e value	Identity
Blast2go	protein binding	GO:0005515	Molecular Function	1.04215e-41	71%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Transcriptional coactivator p15	IPR003173	-	1.04215e-41	71%
Blast2go	ssDNA-binding transcriptional regulator	IPR009044	-	1.04215e-41	71%

Full-Lengther Next Prediction

SNPs (tot: 13)

Position	A %	C %	G %	T %	Probability
61	80		20		0.995493
62			60	20	0.99255
63	40		40	20	1.0
64			40	60	1.0
65	60		40		1.0
66		60	40		1.0
67	80		20		0.995493
68		80	20		0.995493
194		87		12	0.992554
284			86	13	0.999973
428	86			4	0.999642
627			88	11	1.0
630	91	8			1.0

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain