SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene9957

Length: 1183 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene9957

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Thioredoxin reductase n=2 Tax=Picea sitchensis RepID=A9NXV4_PICSI	-	-	94%
FL-Next	sp=Thioredoxin reductase; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	93%
Blast2go	thioredoxin reductase	-	-	92%

Source	InterPros	Term	Type	Identity
Blast2go	Pyridine nucleotide-disulphide oxidoreductase, class-II	IPR000103	-	92%
Blast2go	Pyridine nucleotide-disulphide oxidoreductase, NAD-binding domain	IPR001327	-	92%
Blast2go	Pyridine nucleotide-disulphide oxidoreductase, class-II, active site	IPR008255	-	92%
Blast2go	FAD-dependent pyridine nucleotide-disulphide oxidoreductase	IPR013027	-	92%

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: A9NU83

Fln msg: your sequence is shorter than subject: 190 - 340

Fln protein: ISACAVCDGAAPIFRNRPLAVIGGGDSAMEEANFLTKYGSKVYIIHRRDAFRASKIMQKRALDNPKIEVIWNTVVLEASGNKRGLLSGLNLRNTVTGEVSVLEVSGLFFAIGHEPATKFLEGQLELDSDGYIVTKPGTTHTSIPGVFAAGDVQDKKWRQAITAAGTGCMAALEAEHYLQEMGGQEGKYS*

Protein Length: 191

Fln nts: TATCTCTGCCTGCGCCGTCTGTGATGGTGCCGCTCCCATTTTCCGCAACCGGCCTCTGGCTGTGATTGGGGGCGGAGACTCGGCAATGGAGGAGGCCAACTTCTTGACCAAATACGGTAGCAAAGTTTATATCATTCACAGGCGGGATGCCTTCAGGGCCAGCAAGATCATGCAGAAGAGGGCGCTGGATAACCCCAAGATCGAGGTCATATGGAATACGGTAGTCCTCGAGGCTTCTGGCAACAAGAGGGGTTTGCTCAGCGGGCTGAATCTGCGTAACACGGTCACCGGTGAGGTATCAGTGTTGGAAGTATCGGGGTTGTTCTTTGCCATTGGGCATGAACCGGCCACCAAGTTTCTGGAGGGGCAGTTGGAATTGGACTCGGACGGTTACATAGTGACAAAGCCTGGAACCACCCATACCAGTATTCCCGGGGTGTTCGCCGCCGGAGATGTTCAGGACAAGAAATGGCGTCAAGCAATCACAGCTGCGGGCACGGGCTGCATGGCAGCATTGGAAGCGGAGCACTATTTGCAGGAGATGGGGGGACAGGAGGGAAAATATAGTTGA___TTGTGCTGGAAAGCACAACTACTCTTACTTGAGAAATCGACAGTTCTTGAATAAAAGGATGGCCTGTATTAGTGGTATTTATGCAAGTTTGCTAGTTTTATGTGTAGGGCTTCTATTTTTTTAATTAACCCAATTATTTCTACTTGGGTTTTCTGGGAGATGAGTTCAAATAGGCATGGATAGTAGCATTGAATGATCATATGCCAAGAAGTGTCCAATTTGCCGACATATAAAGTGCTTGTGTCGATGACGTTAACTTTGAAAACGGGCTTGCTCTGCCTTTCATTGTAATAAGAACTTTACGAACTTGCAAAGAGCGTGGTCATTGTTCGTTTTGTTTACTTCACCATATTTCCTAAATCAGTACTGGGATATATGCATTTCAAAGAAACCCCCACAAAGAATTTGTCGACATTCGTTAACTTAGATCAGTAGGCACGAGAAAGATCTATGCAAGGAGGGGTGAATCTTGGAAATTTCTGTAACGGCAACGACTGTTTCACCTGGTATTTGTTTTGTTTGAATCATTCACTTTTTATTACTTAAGGCAATTAAGTCTATTTAACCTTCTTGTTTGTTGCATTGTTGAAAGCACCAGCCAATAAATATTTG

Fln Alignment:

sp_v1.1_unigene9957___ISACAVCDGAAPIFRNRPLAVIGGGDSAMEEANFLTKYGSKVYIIHRRDAFRASKIMQKRALDNPKIEVIWNTVVLEASGNKRGLLSGLNLRNTVTGEVSVLEVSGLFFAIGHEPATKFLEGQLELDSDGYIVTKPGTTHTSIPGVFAAGDVQDKKWRQAITAAGTGCMAALEAEHYLQEMGGQEGKYS
A9NU83______________ISACAVCDGAAPIFRNRPLAVIGGGDSAMEEANFLTKYGSKVYIIHRRDAFRASKIMQKRALDNPKIEVIWNAEVLKASGNERGLLSGLDLRNTVTGEASVLEVFGLFFAIGHEPATKFLEGQLELDTDGYIVTKPGTTQTSIPGVFAAGDVQDKKWRQAITAAGTGCMAALEAEHFLQEIGAQEGKYS

SNPs (tot: 17)

Position	A %	C %	G %	T %	Probability
108	20	80			0.995493
272		85	14		0.993533
273			14	85	0.993533
276	28		71		1.0
328		42		57	1.0
564	85		14		0.993533
565			14	85	0.993533
566	85	14			0.993533
567			85	14	0.993533
568			14	85	0.993533
570		14	85		0.993533
572		14		85	0.993533
574		14	85		0.993533
575	14			85	0.993533
679	16		83		0.994512
1025		68		31	1.0
1089			75	25	0.996473

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain