SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene9956

Length: 1668 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene9956

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Phosphatidate cytidylyltransferase n=1 Tax=Medicago truncatula RepID=Q2HT24_MEDTR	-	-	76%
FL-Next	sp=Phosphatidate cytidylyltransferase; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	97%
Blast2go	phosphatidate cytidylyltransferase	-	-	86%

Source	GOs	Term	Type	e value	Identity
Blast2go	transferase activity	GO:0016740	Molecular Function	0.0	86%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Phosphatidate cytidylyltransferase	IPR000374	-	0.0	86%
Blast2go	Phosphatidate cytidylyltransferase, eukaryota	IPR016720	-	0.0	86%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: D5ACR8

Fln msg: your sequence is longer than subject: 378 - 136

Fln protein: MRTRVWSSVWMIGGFIFIIYMGHLYIWAMIVVIQIYMARELFNLLRRTHEEKELPGFRLLNWHFFFTAMVYVYGRFMSRQLVNTVSSDKVLYQPISNLIKYHMLICYCLYITGFVWFILTLKSKLYKYQFGQYAWTHMILFVVFAQSSFTVGNIFEGIFWFLLPALLIVINDIGAYLWGFFFGRTPLIEVSPKKTWEGFIGASVTTIISAFLLANLLGRFQWLTCPRKDLSTGWLSCDPGPMFKPKHYSLEGWMPSWFPWKEVSVLPVQKHAMAYGLFASSIAPFGGFFASGFKRAFKIKDFGDSIPGHGGITDRMDCQMVMAVFSYIYYQSFILSQSNSVESFLDQIVRNLSFEEQLSLYQQLGEVLYSRGRDQLS*

Protein Length: 379

Fln nts: CAGCAAGAATGCGTCGTGACCTTGGCTGTCACTCATTCCTCCCGTGTCATCTCCATCATCTCGTGCTCGCTATAGAAAGCGCTCAAACGAGGCTTCACAGGAGACACCTAAAACAAATGGAGGCCATCTACTGGTGGATGATCGTAACAAGTACAAATCT_-_ATGCGAACTCGTGTCTGGTCTTCAGTATGGATGATTGGTGGATTTATATTTATTATTTATATGGGTCATCTATACATTTGGGCAATGATCGTTGTTATTCAGATTTATATGGCAAGGGAACTTTTTAATTTGCTTAGAAGAACTCACGAGGAGAAAGAATTGCCAGGTTTCCGACTACTGAACTGGCATTTTTTTTTCACAGCAATGGTCTATGTTTATGGACGTTTTATGAGTAGACAACTTGTCAACACTGTATCTTCGGATAAAGTGCTTTACCAGCCTATCAGTAACCTTATCAAGTATCATATGCTTATATGCTATTGCTTGTACATAACAGGTTTTGTTTGGTTTATTTTAACCCTAAAAAGCAAACTGTACAAGTATCAGTTTGGACAGTATGCATGGACACACATGATTCTTTTTGTTGTATTTGCACAATCATCTTTTACAGTGGGGAATATCTTTGAAGGCATTTTCTGGTTTCTATTACCAGCATTGCTGATTGTCATTAATGACATTGGTGCCTACCTTTGGGGGTTTTTTTTTGGTCGAACACCATTAATCGAAGTGTCTCCAAAGAAGACTTGGGAGGGCTTCATCGGAGCATCTGTTACTACCATAATTTCAGCCTTCCTGCTGGCAAATCTGCTGGGGCGTTTTCAGTGGTTAACATGCCCACGAAAGGATTTGTCAACAGGATGGTTATCTTGTGATCCTGGTCCCATGTTCAAGCCCAAGCACTACTCTTTAGAAGGCTGGATGCCTTCATGGTTTCCATGGAAGGAAGTGAGTGTTTTGCCAGTACAGAAGCATGCAATGGCATATGGTCTGTTTGCATCAAGTATCGCTCCATTTGGAGGATTCTTTGCCAGTGGTTTCAAACGGGCATTCAAAATCAAGGATTTTGGGGACAGCATTCCTGGTCATGGTGGCATTACTGATCGGATGGATTGTCAGATGGTGATGGCGGTATTTTCTTACATTTATTATCAATCTTTTATTCTCTCTCAGAGCAACTCAGTTGAGAGTTTTCTGGATCAGATTGTAAGAAACTTGTCTTTTGAGGAGCAGTTAAGTTTGTACCAACAACTTGGAGAGGTTTTGTACAGTAGGGGACGAGATCAGCTTTCTTAG___ATTGTACAAAGTATCTAGCGATGTGATTCTTAGTACAGGGTCATTCATGTTGTGATCGGTTTGATATGTTCGACATGGCCATTGTAACATGGTCAAATAGAGTCAGTAATGGTTTTGTAAGGCTGGATATATATAATCTGTCGAAGATAATCTCTTGAACATTGTCATTGCCGAAATTATAACCAGAATGTACAGTTACACAATATTTTCTTGTGGCCAATAACTGTTTTGTGCCTACTTAAGAAGTCATTTGGCCGCAAGATGAAGGTCCGGCGCGAGCCACTATGGGCATTGTAATTTCAGACTTCTATTGCATTTTATATTTGTAAATGCAAATTATTAGGTTTGTTTGTGGAACACTTCTCCTTTCATTA

Fln Alignment:

sp_v1.1_unigene9956___MFKPKHYSLEGWMPSWFPWKEVSVLPVQKHAMAYGLFASSIAPFGGFFASGFKRAFKIKDFGDSIPGHGGITDRMDCQMVMAVFSYIYYQSFILSQSNSVESFLDQIVRNLSFEEQLSLYQQLGEVLYSRGRDQLS
D5ACR8______________MFKPKHYSLESWTPSWFPWKEVSVLPVQKHALAYGLFASSIAPFGGFFASGFKRAFKIKDFGDSIPGHGGITDRMDCQMVMAVFSYIYYQSFILSQSNSVESFLDQIVRNLSFEEQLSLYKQLGEVLYSRGRDQLS

SNPs (tot: 19)

Position	A %	C %	G %	T %	Probability
687	40			20	1.0
688	60	40			1.0
689		75		25	0.996473
693			33	66	0.997452
694			66	33	0.997452
696			33	66	0.997452
699			66	33	0.997452
857	88		11		0.923564
1259	3	7	88		0.999079
1262		7		92	0.999664
1263			7	92	0.999664
1269	92	7			0.999664
1270			92	7	0.999664
1272	92		8		0.999718
1274		8	92		0.999718
1275			92	8	0.999718
1277	92			8	0.999718
1281		8	92		0.999718
1551		57		42	1.0

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain