SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene9948

Length: 911 nt

Origin of reads: Biogeco_2 Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene9948

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	speckle-type POZ protein-related [Arabidopsis thaliana] emb\|CAB87422.1\| putative protein [Arabidopsis thaliana] gb\|AAS77485.1\| At3g56230 [Arabidopsis thaliana] dbj\|BAD44062.1\| putative protein [Arabidopsis thaliana]	-	-	1.0e-08	24%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	32%
Blast2go	protein binding	-	-	4.27647e-15	52%

Full-Lengther Next Prediction

Fln status: Putative Complete

Fln database: coniferopsida.fasta

Fln subject: A9NPG7

Fln msg: atg_distance in limit (1-15): atg_distance = 12, No stop codon before M and low homology subject, your sequence is shorter than subject: 231 - 249

Fln protein: MAGSCRCCDGILCSEIPYSKDDRHYDSKKYDMEEEVAFLRKWSFVPGELTSPPSETGDYVTLFCNSDGSQLFAHGLILVNRSEVFRKMLEEVDLKEKETREVVIQEVGGESLKTFLKFLYTAQLNSEEMHAKYRELVKLAHFYQVKLLLMKLDNFISSEIVSKNACIEILKMAYLYDLETTREAALNLIVRELNDDLYDITFQELQTDYPWMARHLSKDIYKLLRETHSS*

Protein Length: 232

Fln nts: ATGGGGGAAGGAAGCCGGGCTCACAAATTTTCTTCGAAATCATCCCAAGCTTAAGGGCA_-_ATGGCAGGGAGTTGCAGGTGCTGTGACGGAATTTTATGTTCTGAAATCCCATACTCAAAGGATGACCGCCATTATGATTCCAAGAAATATGACATGGAAGAAGAGGTTGCATTTCTAAGAAAATGGAGTTTTGTTCCAGGGGAATTAACATCACCACCATCAGAAACTGGAGATTATGTTACCCTCTTTTGTAATTCCGATGGATCCCAATTGTTCGCACACGGTTTGATTTTGGTGAATAGGTCAGAGGTTTTCCGAAAAATGCTTGAAGAAGTAGATCTCAAGGAAAAAGAAACTAGGGAAGTGGTGATTCAGGAAGTTGGTGGAGAAAGTCTCAAAACGTTTCTGAAATTTCTATACACTGCCCAATTGAACTCTGAAGAAATGCATGCGAAATACAGAGAGCTTGTAAAGCTCGCCCATTTCTACCAAGTGAAGTTGCTGCTCATGAAATTGGACAACTTCATTTCCAGTGAGATTGTGAGCAAGAACGCCTGTATTGAGATTTTGAAAATGGCTTATTTATATGATCTGGAAACAACCAGAGAGGCCGCTCTGAATCTTATTGTTCGTGAGCTCAACGATGACTTGTACGATATAACCTTCCAAGAATTGCAAACGGACTATCCATGGATGGCTCGTCATCTTTCTAAAGATATTTATAAACTGTTGCGAGAAACACATTCGAGTTAAGCCAGTGTTTAATTAGTGTCAGTGACTTGGTGTGTTCTATTTCGGATCGGATCTCCACTACTCAGAGACACGGACTTTGGACTTCGTGTTTCATTTAAATAACAGCATGTTGTTATATAACAAAGTCCGATTCATGACATGACATGTCTCTATTTTAGA

Fln Alignment:

sp_v1.1_unigene9948___AGSCRCCDGILCSEIPYSKDDRHYDSKKYDMEE---EVAFLRKWSFVPGELTSPPSETGDYVTLFCN-SDGSQLFAHGLILVNRSEVFRKMLEEVDLKEKETREVVIQEVGGESLKTFLKFLYTAQLNSEEMHAKYRELVKLAHFYQVKLLLMKLDNFISSEIVSKNACIEILKMAYLYDLETTREAALNLIVRELN
A9NPG7______________AGTCREC---------YEEASETEEELKKEIEELKSRIAFLKMWA--------SEAMLDDYTDVSLQLSDGSKIKAHRAVLISKSPVFKAMLEN-EMEENRTRTIKITDFSYEVLRSFVHYLYTAETFPDEQMA--YDLLVLAEKYQVKHLRTVCEKFITSRVNNDNA-IMSFAFAHQHNAKHLREAALSLIIENMN

SNPs (tot: 13)

Position	A %	C %	G %	T %	Probability
582			20	80	0.995493
583			20	20	0.99255
584	20		20	60	0.99255
585	80			20	0.995493
667		83		16	0.994512
738	85			14	0.993533
739	85			14	0.993533
740		85	14		0.993533
741	85		14		0.993533
827	50		50		1.0
860	50	50			1.0
872	50		50		1.0
886		50		50	1.0

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain