SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene9946

Length: 1557 nt

Origin of reads: Biogeco_1 Uagpf Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene9946

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	calcineurin subunit B; K06268 protein phosphatase 3, regulatory subunit	-	-	69%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	97%
Blast2go	calcineurin subunit b	-	-	90%

Source	GOs	Term	Type	e value	Identity
Blast2go	vacuole	GO:0005773	Cellular Component	0.0	90%

Source	InterPros	Term	Type	Identity
Blast2go	Calcium-binding EF-hand	IPR002048	-	90%
Blast2go	EF-hand-like domain	IPR011992	-	90%
Blast2go	EF-Hand 1, calcium-binding site	IPR018247	-	90%
Blast2go	EF-HAND 2	IPR018249	-	90%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: D5AE28

Fln msg:

Fln protein: MGNTSSMLTQYDIEDVQEHCNNMFSQQEIVSLYQRFCALDRNGKGFISADEFLSVPEFAVNPLSQRLLRMLDGLNFKDFLAFLSSFSSRASIRQKIEFIFKVYDSDGNGKVTLEDILEVLRDLTGSFISEEQRQQVVGQVLEEAGYSKDCGLTVEDFVKILGMSGLKMEVEVPVD*

Protein Length: 177

Fln nts: CGTCGTGACCTTGGCTGTCACTCATGTTGTGATCTCAGTTGCATTTCCAAATGGAAAATCAAACCCGCGCGGTATCCTCCTTTCGGGATTGTTCGCTCCAATAAGTTAAAAGTCATATTTTTGGTGGTGTGTTTAACAAAGACGATGACTTGATTCCGCACTCATTATTCCGTTGGCTCGAATTTAGGGCACTCTTAAAATGAGTTGATTTCTCGCACCTTTTCAGTAGTACCAGAGTTCTTACCACCTGGACCTTGGTTTGACCCGTAGAATAATTCAAACATAGCTTTGTACCATTTCCAATCTATGGTGTTTAGGTCCGAATTCACTCAAGGTTTTATTCAGGATGCATGCTAAGGAAGTGGCATAGGGAGAGCTTCTTGAATAGAACGTGGAAGGCTAGGGAACGTATTGCATTAGTACATTCAGACTGCTGTGGTCCAGTGGAGACTGTCTTTTAGAAAGACAAGGGGGAACAATACGTTTCATA_-_ATGGGCAATACATCATCTATGCTTACTCAGTATGACATTGAGGATGTCCAAGAGCACTGCAATAACATGTTTTCACAGCAAGAAATAGTTTCCCTGTATCAGCGGTTCTGTGCACTTGATCGTAATGGGAAGGGGTTTATTTCAGCAGATGAATTCTTATCTGTTCCAGAGTTTGCAGTGAATCCACTTTCACAGAGATTGCTGAGAATGTTGGATGGTTTGAACTTCAAAGATTTCTTAGCTTTTTTATCATCCTTCAGTTCCAGAGCAAGTATTCGACAAAAGATTGAATTCATCTTCAAGGTTTATGATTCAGATGGCAATGGGAAAGTGACACTCGAAGATATACTCGAAGTGTTGCGGGATTTGACAGGATCTTTTATTTCTGAAGAGCAGCGGCAGCAAGTTGTGGGTCAAGTTTTGGAGGAAGCAGGATATTCAAAAGATTGTGGTTTGACAGTTGAAGATTTTGTCAAGATTCTTGGCATGTCCGGATTGAAGATGGAGGTTGAAGTGCCGGTGGATTGA___AGCTTGGTGGCCCTGCCCACGTTGCTCCATATATTCTTCATTTATTGTCTCTTTAGCACTTTGTAAACGGAAGCTCAGCTTTGGCATATGTGCAAACTGTAATTCCTTCCAAAGTTGCATATAGGTGTGTGTGATGCCTGCCCAACCTTATTAAAACCTCTTTATTTTGTCCAAGATGGGTTACCTACATTTGCTGGAGAGGAAATTGAATATAACGCATAGAGTATCCATCTCAGATTCTTGCGAACTATAATCCGCATATTATGCTACACGATCAGGGCATTGGATATAAATAATAATATGCATGAAGGGGAGGCTGTAAATTGCAATTATGGCATAAGATGTTCACGCTTTCAGATGAAGAGAATAGTTACATTACCTATGCTTCACAATTCATTCTATTTCCTGCCTAAAGTTTCCGTAGGGAACATGATAATTGACATGCCATTCCAAGTTACCTTGTCAGAAAATCCTCTGTTGAGAAGTATATGCTAAATTTCTGATTGTTTATATTACCTTGATTGCAGATTACATTTTCA

Fln Alignment:

sp_v1.1_unigene9946___MGNTSSMLTQYDIEDVQEHCNNMFSQQEIVSLYQRFCALDRNGKGFISADEFLSVPEFAVNPLSQRLLRMLDGLNFKDXXXXXXXXXXXXXIRQKIEFIFKVYDSDGNGKVTLEDILEVLRDLTGSFISEEQRQQVVGQVLEEAGYSKDCGLTVEDFVKILGMSGLKMEVEVPVD
D5AE28______________MGNTSSMLTQYDIEDVQEHCNNMFSQQEIVSLYKRFCALDRNGKGFISADEFLSVPEFAVNPLSQRLLRMLDGLNFKEFLAFLSAFSSRASIRQKIEFIFKVYDSDGNGKVTLEDILEVLRDLTGSFISEEQRQQVVGQVLEEAGYSKDCGLTIEDFVKILDMSGLKMEVEVPVD

SNPs (tot: 35)

Position	A %	C %	G %	T %	Probability
343	33	66			0.997452
438		16	83		0.994512
442	16	83			0.994512
444	83	16			0.994512
445			83	16	0.994512
450	80			20	0.995493
452	80			20	0.995493
454	20			80	0.995493
455		20	80		0.995493
532		14		85	0.993533
941		15		84	0.999986
955		15		84	0.999986
956	15		84		0.999986
1044		14		85	0.999981
1046		85	14		0.999981
1047	14			85	0.999981
1050	85			14	0.999981
1052	85		14		0.999981
1053			14	85	0.999981
1054	85	14			0.999981
1058		13	6	80	0.999961
1064		13		86	0.999973
1128	11			88	0.923564
1179		90	10		0.90298
1182			10	90	0.90298
1184			10	90	0.90298
1186		10		90	0.90298
1187		10		90	0.90298
1189		10		90	0.90298
1192		90		10	0.90298
1195	90	10			0.90298
1196			90	10	0.90298
1197	90	10			0.90298
1198	10			90	0.90298
1529		12		87	0.992554

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain