SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene9941

Length: 2958 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

>sp_v1.1_unigene9941
CGTCGTGACCTTGGCTGTCACTCAATGTTCGCTTTGTCTTTGGCGGCAACGAAGAAATTTTCAGCTCTGTTGTCTTGAAGTTGTTGACAGCTTCTGCCACGCCGTTGGCTTTGGCCCTAGTTGTGTGGTTGGCGAGTTTCGATTTTGCATCTGCCATGCCCACCCGCGACCTCCTCTCTCTCTTTTTCTCACGCCAACTGGGACTTCCAGGGCACTGAAATTGTAATGCTTGCCAACGCCCGAGGTTCGAACCCTTGACCTGAGAGACATTCAAAGGCTCTAGGGTTTATAGGCGAATTCTCAAAATCAGCAACAGGCTGCTGTTGGCCGTGTGAAATTTTTGATTTGTGCTGTGTGCGCATTTATTTCATACTGACTGCGAGGGGCAGCACGCACGATCTCACCGAAAATCTTCTGAACAAAGCTCGTGGGAGGTTTCGATCCCATGGCGTGTCCGTGGAGAGTGAAAACTAAAACAGGAACAGACCGCCGTGATCGGGCCTCGTGAATGACACAGACGTGAACTTGTGAACTTCGACCTTCGTGACCTGCATCGGGCGAAAGAAGAGCAGAATCGCGTCTCTGCATCTATGGGGAACTGCTGTGGATCTGCTGGGGGGCCAAAGAAAAGGGTTAAGGCGGCCCCCGCACGTTCCAATGTCCGCAAGAAGGATAATGTAGGAGGAGATGTTGCCAAGGTTCCTGTCCTCAAGGGGTGCCTTGAGCAGAGCGTCGAGGAGAGGTATTTGTTGGATAGAGAACTCGGAAGAGGGGAGTTTGGAATCACTTATCTGTGTACTGATAGAGAATCTCGGGAGATGCTGGCTTGTAAGTCTATTTCCAAAAGAAAGCTCAAGACTGCGATCGACATCGAAGATGTGCGGCGGGAAGTAGCTATTATGAAACATTTGCCCAAGAATAATAACATCGTGAGCCTGAAGGCTACTTGTGAAGACGACAATGCTGTTCATTTGTTGATGGAACTGTGCGAGGGTGGGGAGCTTTTCGATCGAATCGTTGCCCGGGGCCATTATACGGAACGCGCGGCCGCTGCTGTTACACGGACAATCGTGGAAGTCGTTCAGCTCTGCCACAAACATGGGGTGATCCATAGGGACCTTAAGCCAGAGAATTTCCTCTTTGCGAACAAAAAGGAGAATTCACCTCTTAAGGCCATTGATTTTGGATTATCTGTATTCTTCAAACCTGGGGATCGCTTTTCTGAAATAGTTGGTAGTCCATACTATATGGCACCAGAGGTTCTGAAGCGTAATTATGGACCTGAGATCGACGTGTGGAGTGCTGGTGTTATCCTGTATATTTTATTGTGTGGCGTGCCACCATTTTGGGCTGAATCAGAGCAAGGAGTTGCTCAGGCGATTCTTCGTGGTTTTGTAGACTTCAAAAGAGAGCCATGGCCAAAAATTTCTGAAGCTGCAAAAAGTCTTGTACGCCAGATGCTGGAGCCTGATCCCAAGCTACGGTTAACAGCTCAGCAAGTACTTGAGCATCCTTGGTTACAGAATGCCAAAAAGGCTCCAAATGTTCCCCTCGGTGATGTTGTGAAGACTAGGCTTAAACAATTTTCTATGACAAATAAGTTCAAAAAGAAAGCTTTAAGGGTTATCGCTGACCATTTATCTGTGGAAGAAACCAAAGGCATTAAAGATATGTTCAAGATGATGGACACTGATAACAGTGGTACAATATCATATGAAAAGCTGAAAGCAGGTCTTCATAAGCTCGGTTCCCATATGGATGAATCAGAAGTGCAGACATTAATGGAGGCTGCGGATGCTGATGGAAATGGCACACTCGATTATCGAGAATTTGTTGCGGCTTCGCTTCATATGCAGAGCATAGACAATGATGAATACTTACGTAAGGCATTTCTGTACTTTGACAAAGATGGCAGTGGTTACATTGAAATCGAGGAGTTTAGAGAAGCCTTAGCTGATGACTTTGGTCCAGATGACATAGATGTGGTGAACAACATTTTTAATGAGGTGGATGCAGACAAGGATGGATGTATTAGTTACGAAGAGTTTGCATCCATGATGAAAACTGGTACAGACTGGAGAAAAGCCTCTCGACATTATTCACGAGGGAGGTTTAACAGTCTCAGCATAAAATTGGTCAGGGATGGCTCTTTGCAGATGGAAAATAATGAAAGGAGATAATCAAGTCTCTAAGGGAATTTCTTCCATTGTTAAAGAGTCTAAATGAGACATTTTATGAAGGCCTTTCAAGGTGAATGATCGTTTTGTGCCATATTATTCTCTGTATGCATTTTCTGGGTGCTGGTGTTGGTGGCTCCTAGCTTGTGGAATGAGGCTAGCCTCATATGGAGAGTATTACAATGATTTGTGCTCCATGTATACAATTCAAGCAGGTGTATGCATCAAGATTGTAGAGTTTTGGTTATTGGTATTCATGCCTTAAGTCGTTAAGGTAAGCTTACTGTTTGATGCTAAAGTTCATTCATATCTGGCAAGCTGTTGAAAGGTGCACCGATGCAAGATGTTCTTTTGACTGTGTTTAGATATCCTAGTCCTTTTGGGGACATGGATCACACAAAAATTCTCTAATCTGGCTGGCTTGATTTCTTATAAAATTCTTTGACTAGGGTGATCAAGTCATGTTGTAATACCTGCGTTTGCACACAGTCAAGAAACTTCGAATGCCTGGTTTCAGCACACATGACAACCTGCGGTAAGTTATTTAATGCTTTTATGAGATTTTATGTAGAGCCAACAAAGGAGATAATGGTATGTTAAAAGGTGGCCCTTGCTTGGGCTTTGACACCTGGAGATGTCTTTTCCCATGGTAAAGACTTTTTTCGATTTTTAGAATATTCATTTATGCAGTGAAGATGATAGTTATCATGCAAATAGGCGTAGTAAGGGTTGTCTATTTGGGTGGACAATCACATAAAAAGGATAGCTGCTTGTATAAAAC

Ace file of the UniGene sp_v1.1_unigene9941

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Calcium dependent protein kinase 23 n=4 Tax=rosids RepID=B9HCX6_POPTR	-	-	76%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	95%
Blast2go	calcium-dependent protein kinase	-	-	85%

Source	InterPros	Term	Type	Identity
Blast2go	Protein kinase, catalytic domain	IPR000719	-	85%
Blast2go	Calcium-binding EF-hand	IPR002048	-	85%
Blast2go	Serine/threonine- / dual-specificity protein kinase, catalytic domain	IPR002290	-	85%
Blast2go	Serine/threonine-protein kinase, active site	IPR008271	-	85%
Blast2go	Protein kinase-like domain	IPR011009	-	85%
Blast2go	EF-hand-like domain	IPR011992	-	85%
Blast2go	Protein kinase, ATP binding site	IPR017441	-	85%
Blast2go	Serine/threonine-protein kinase-like domain	IPR017442	-	85%
Blast2go	EF-Hand 1, calcium-binding site	IPR018247	-	85%
Blast2go	EF-hand	IPR018248	-	85%
Blast2go	EF-HAND 2	IPR018249	-	85%
Blast2go	Tyrosine-protein kinase, catalytic domain	IPR020635	-	85%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: C0PQ38

Fln msg:

Fln protein: MGNCCGSAGGPKKRVKAAPARSNVRKKDNVGGDVAKVPVLKGCLEQSVEERYLLDRELGRGEFGITYLCTDRESREMLACKSISKRKLKTAIDIEDVRREVAIMKHLPKNNNIVSLKATCEDDNAVHLLMELCEGGELFDRIVARGHYTERAAAAVTRTIVEVVQLCHKHGVIHRDLKPENFLFANKKENSPLKAIDFGLSVFFKPGDRFSEIVGSPYYMAPEVLKRNYGPEIDVWSAGVILYILLCGVPPFWAESEQGVAQAILRGFVDFKREPWPKISEAAKSLVRQMLEPDPKLRLTAQQVLEHPWLQNAKKAPNVPLGDVVKTRLKQFSMTNKFKKKALRVIADHLSVEETKGIKDMFKMMDTDNSGTISYEKLKAGLHKLGSHMDESEVQTLMEAADADGNGTLDYREFVAASLHMQSIDNDEYLRKAFLYFDKDGSGYIEIEEFREALADDFGPDDIDVVNNIFNEVDADKDGCISYEEFASMMKTGTDWRKASRHYSRGRFNSLSIKLVRDGSLQMENNERR*

Protein Length: 531

Fln nts: CGTCGTGACCTTGGCTGTCACTCAATGTTCGCTTTGTCTTTGGCGGCAACGAAGAAATTTTCAGCTCTGTTGTCTTGAAGTTGTTGACAGCTTCTGCCACGCCGTTGGCTTTGGCCCTAGTTGTGTGGTTGGCGAGTTTCGATTTTGCATCTGCCATGCCCACCCGCGACCTCCTCTCTCTCTTTTTCTCACGCCAACTGGGACTTCCAGGGCACTGAAATTGTAATGCTTGCCAACGCCCGAGGTTCGAACCCTTGACCTGAGAGACATTCAAAGGCTCTAGGGTTTATAGGCGAATTCTCAAAATCAGCAACAGGCTGCTGTTGGCCGTGTGAAATTTTTGATTTGTGCTGTGTGCGCATTTATTTCATACTGACTGCGAGGGGCAGCACGCACGATCTCACCGAAAATCTTCTGAACAAAGCTCGTGGGAGGTTTCGATCCCATGGCGTGTCCGTGGAGAGTGAAAACTAAAACAGGAACAGACCGCCGTGATCGGGCCTCGTGAATGACACAGACGTGAACTTGTGAACTTCGACCTTCGTGACCTGCATCGGGCGAAAGAAGAGCAGAATCGCGTCTCTGCATCT_-_ATGGGGAACTGCTGTGGATCTGCTGGGGGGCCAAAGAAAAGGGTTAAGGCGGCCCCCGCACGTTCCAATGTCCGCAAGAAGGATAATGTAGGAGGAGATGTTGCCAAGGTTCCTGTCCTCAAGGGGTGCCTTGAGCAGAGCGTCGAGGAGAGGTATTTGTTGGATAGAGAACTCGGAAGAGGGGAGTTTGGAATCACTTATCTGTGTACTGATAGAGAATCTCGGGAGATGCTGGCTTGTAAGTCTATTTCCAAAAGAAAGCTCAAGACTGCGATCGACATCGAAGATGTGCGGCGGGAAGTAGCTATTATGAAACATTTGCCCAAGAATAATAACATCGTGAGCCTGAAGGCTACTTGTGAAGACGACAATGCTGTTCATTTGTTGATGGAACTGTGCGAGGGTGGGGAGCTTTTCGATCGAATCGTTGCCCGGGGCCATTATACGGAACGCGCGGCCGCTGCTGTTACACGGACAATCGTGGAAGTCGTTCAGCTCTGCCACAAACATGGGGTGATCCATAGGGACCTTAAGCCAGAGAATTTCCTCTTTGCGAACAAAAAGGAGAATTCACCTCTTAAGGCCATTGATTTTGGATTATCTGTATTCTTCAAACCTGGGGATCGCTTTTCTGAAATAGTTGGTAGTCCATACTATATGGCACCAGAGGTTCTGAAGCGTAATTATGGACCTGAGATCGACGTGTGGAGTGCTGGTGTTATCCTGTATATTTTATTGTGTGGCGTGCCACCATTTTGGGCTGAATCAGAGCAAGGAGTTGCTCAGGCGATTCTTCGTGGTTTTGTAGACTTCAAAAGAGAGCCATGGCCAAAAATTTCTGAAGCTGCAAAAAGTCTTGTACGCCAGATGCTGGAGCCTGATCCCAAGCTACGGTTAACAGCTCAGCAAGTACTTGAGCATCCTTGGTTACAGAATGCCAAAAAGGCTCCAAATGTTCCCCTCGGTGATGTTGTGAAGACTAGGCTTAAACAATTTTCTATGACAAATAAGTTCAAAAAGAAAGCTTTAAGGGTTATCGCTGACCATTTATCTGTGGAAGAAACCAAAGGCATTAAAGATATGTTCAAGATGATGGACACTGATAACAGTGGTACAATATCATATGAAAAGCTGAAAGCAGGTCTTCATAAGCTCGGTTCCCATATGGATGAATCAGAAGTGCAGACATTAATGGAGGCTGCGGATGCTGATGGAAATGGCACACTCGATTATCGAGAATTTGTTGCGGCTTCGCTTCATATGCAGAGCATAGACAATGATGAATACTTACGTAAGGCATTTCTGTACTTTGACAAAGATGGCAGTGGTTACATTGAAATCGAGGAGTTTAGAGAAGCCTTAGCTGATGACTTTGGTCCAGATGACATAGATGTGGTGAACAACATTTTTAATGAGGTGGATGCAGACAAGGATGGATGTATTAGTTACGAAGAGTTTGCATCCATGATGAAAACTGGTACAGACTGGAGAAAAGCCTCTCGACATTATTCACGAGGGAGGTTTAACAGTCTCAGCATAAAATTGGTCAGGGATGGCTCTTTGCAGATGGAAAATAATGAAAGGAGATAA___TCAAGTCTCTAAGGGAATTTCTTCCATTGTTAAAGAGTCTAAATGAGACATTTTATGAAGGCCTTTCAAGGTGAATGATCGTTTTGTGCCATATTATTCTCTGTATGCATTTTCTGGGTGCTGGTGTTGGTGGCTCCTAGCTTGTGGAATGAGGCTAGCCTCATATGGAGAGTATTACAATGATTTGTGCTCCATGTATACAATTCAAGCAGGTGTATGCATCAAGATTGTAGAGTTTTGGTTATTGGTATTCATGCCTTAAGTCGTTAAGGTAAGCTTACTGTTTGATGCTAAAGTTCATTCATATCTGGCAAGCTGTTGAAAGGTGCACCGATGCAAGATGTTCTTTTGACTGTGTTTAGATATCCTAGTCCTTTTGGGGACATGGATCACACAAAAATTCTCTAATCTGGCTGGCTTGATTTCTTATAAAATTCTTTGACTAGGGTGATCAAGTCATGTTGTAATACCTGCGTTTGCACACAGTCAAGAAACTTCGAATGCCTGGTTTCAGCACACATGACAACCTGCGGTAAGTTATTTAATGCTTTTATGAGATTTTATGTAGAGCCAACAAAGGAGATAATGGTATGTTAAAAGGTGGCCCTTGCTTGGGCTTTGACACCTGGAGATGTCTTTTCCCATGGTAAAGACTTTTTTCGATTTTTAGAATATTCATTTATGCAGTGAAGATGATAGTTATCATGCAAATAGGCGTAGTAAGGGTTGTCTATTTGGGTGGACAATCACATAAAAAGGATAGCTGCTTGTATAAAAC

Fln Alignment:

sp_v1.1_unigene9941___MGNCCGSAGGPKKRVKAAPARSNVRKKDNVGGDVAKVPVLKGCLEQSVEERYLLDRELGRGEFGITYLCTDRESREMLACKSISKRKLKTAIDIEDVRREVAIMKHLPKNNNIVSLKATCEDDNAVHLLMELCEGGELFDRIVARGHYTERAAAAVTRTIVEVVQLCHKHGVIHRDLKPENFLFANKKENSPLKAIDFGLSVFFKPGDRFSEIVGSPYYMAPEVLKRNYGPEIDVWSAGVILYILLCGVPPFWAESEQGVAQAILRGFVDFKREPWPKISEAAKSLVRQMLEPDPKLRLTAQQVLEHPWLQNAKKAPNVPLGDVVKTRLKQFSMTNKFKKKALRVIADHLSVEETKGIKDMFKMMDTDNSGTISYEKLKAGLHKLGSHMDESEVQTLMEAADADGNGTLDYREFVAASLHMQSIDNDEYLRKAFLYFDKDGSGYIEIEEFREALADDFGPDDIDVVNNIFNEVDADKDGCISYEEFASMMKTGTDWRKASRHYSRGRFNSLSIKLVRDGSLQMENNERR
C0PQ38______________MGNCCGSAVGKKKRVKASPAGPNGRKRDNVGGDVAKIPVLKGCLEQSVEERFLLDRELGRGEFGITYLCTDRESRELLACKSISKRKLKTAIDIEDVRREVAIMKHLPKNNNIVSLKATCEDDNAVHLLMELCEGGELFDRIVARGHYTERAAAAVTRTIVEVVQLCHKHGVIHRDLKPENFLFANKKENSPLKAIDFGLSVFFKPGDRFSEIVGSPYYMAPEVLKRNYGPEIDVWSAGVILYILLCGVPPFWAESEQGVAQAILRGFVDFKREPWPKISETAKSLVRQMLEPDPKRRLTAQQVIEHPWLQNAKKAPNVPLGDVVKTRLKQFSMTNKFKKRALRVIADHLSVEETKGIKDMFKMMDTDNSGSISYDKLKAGLHKLGSQMDESEVQILMDAADADGNGMLDYREFVAASLHMQSIDNDDYLRKAFLFFDKDGSGYIEIEEFREALADDFGPNDIDVVNSIFNEVDADKDGRISYEEFASMMKTGTDWRKASRHYSRGRFNNLSIKLVRDGSLQMENNERR

SNPs (tot: 7)

Position	A %	C %	G %	T %	Probability
574	83		16		0.994512
657		66		33	0.997452
1608	75		8		0.99999
1813	15		84		0.999986
2195	70	10	10	10	0.922578
2198	10		90		0.90298
2933		40	60		1.0

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain