SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene9935

Length: 1413 nt

Origin of reads: Biogeco_1 Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene9935

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Pinoresinol-lariciresinol reductase n=1 Tax=Thuja plicata RepID=Q9LD14_THUPL	-	-	58%
FL-Next	tr=Pinoresinol-lariciresinol reductase; Thuja plicata (Western red-cedar) (Giant arborvitae).	-	-	58%
Blast2go	pinoresinol-lariciresinol reductase	-	-	73%

Source	InterPros	Term	Type	e value	Identity
Blast2go	NmrA-like	IPR008030	-	0.0	73%
Blast2go	NAD(P)-binding domain	IPR016040	-	0.0	73%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: Q9LD14

Fln msg:

Fln protein: MGKPSRVLIVGGTGYMGKRMVMASLALGHPTFVLVRPDQVASNIHKAQLVISFKQAGAHLIQGSVDDHESIVNALKQVDVVVSTIAESHILEQLKLIKAIKEVGTIKRFLPSEFGMDVDRMHHVMEPGNLLFEQKRQVRRATEAARIPYTYVSANCFAGYFLAGLAQYGRFIPPTDKVFIYGEGTRKVIWVYEDDAATYALKTVDDPKTVNKTVYIRPPKNILSQREVVEIWEKLCGKVLHKMPISEEDWLAPMEDESTSVQRKVEMAIFYHIFYRGELANFELNQSNQLEAATLYPDVEYTSVERYLSRFA*

Protein Length: 314

Fln nts: ATGGGGCAATCTGTCGCACCTATCACGATACGCTTCCTTCTCTTCTCACCTCGGATTTCGTTGCACTGGATGTTACAAGCTATTTTGCAGAATATTTCACGCCACAGGTTAGCAACAAATA_-_ATGGGAAAACCCAGCAGAGTGTTGATCGTTGGTGGCACTGGATATATGGGCAAAAGGATGGTAATGGCCAGCTTGGCCTTGGGGCACCCCACCTTTGTTCTTGTACGACCTGATCAAGTCGCTTCCAATATTCATAAAGCGCAGCTTGTAATTTCCTTCAAACAGGCCGGCGCGCATCTTATTCAGGGTTCAGTGGATGATCACGAGAGCATTGTAAATGCATTAAAACAAGTGGATGTAGTGGTATCCACAATAGCGGAAAGCCATATACTTGAGCAGCTTAAATTGATAAAGGCTATCAAGGAAGTAGGCACTATCAAGCGTTTTCTTCCATCGGAGTTCGGAATGGACGTCGATCGGATGCACCATGTTATGGAGCCCGGCAACTTATTATTTGAACAGAAGAGGCAAGTTCGGCGTGCAACGGAAGCCGCAAGGATTCCGTATACATACGTCTCTGCAAACTGTTTTGCAGGCTACTTTCTGGCGGGGCTTGCACAGTATGGCCGTTTCATACCTCCTACCGACAAAGTATTTATATATGGAGAAGGCACTAGAAAAGTTATTTGGGTATACGAGGATGATGCCGCAACATATGCACTCAAAACTGTGGACGACCCCAAAACGGTGAACAAGACTGTGTATATACGCCCACCTAAAAACATTTTATCTCAGAGAGAGGTGGTGGAGATTTGGGAGAAACTATGTGGAAAGGTTCTGCACAAGATGCCCATCTCAGAGGAGGACTGGTTAGCTCCAATGGAAGATGAATCAACAAGTGTTCAGAGGAAAGTGGAGATGGCGATATTTTACCATATATTTTACAGGGGTGAGCTCGCCAACTTTGAACTAAATCAATCCAACCAACTGGAGGCTGCTACTCTCTATCCCGACGTCGAATACACATCCGTCGAGCGTTATTTGAGCCGTTTTGCGTAG___ATTTATTGCTCCTTTACTCATCTCTCCATTCTCTGCAACAAATAAATGGAGATCGCTCGTATCAGGATTGCTTTGCATTTAATCACACCACAGTTGTGATTAATAAAGATACGTCTGCTTCAATTCTTTTTTTGTTCAAGAGAACAATAAGCTTCAACTTAAAGTTAAAGTTGAACTATTTTACATACAAATTTTGTACCGTGATCACTCTTGTGTTTCATCTTTTCAATCGAATATTTCCGAAAATGGTGTGTAAATTGACAATTATGGTGGGTGGACATCTCTCCCTTTCAAAAACTTTTGTAAAAAACTTTAATTTACTATTTTTAAATATTATATAGGTGAGGTTTAGC

Fln Alignment:

sp_v1.1_unigene9935___MGKPSRVLIVGGTGYMGKRMVMASLALGHPTFVLVRPDQVASNIHKAQLVISFKQAGAHLIQGSVDDHESIVNALKQVDVVVSTIA----ESHILEQLKLIKAIKEVGTIKRFLPSEFGMDVDRMHHVMEPGNLLFEQKRQVRRATEAARIPYTYVSANCFAGYFLAGLAQY-GRFIPPTDKVFIYGEGTRKVIWVYEDDAATYALKTVDDPKTVNKTVYIRPPKNILSQREVVEIWEKLCGKVLHKMPISEEDWLAPMEDESTSVQRKVEMAIFYHIFYRGELANFELNQSNQLEAATLYPDVEYTSVERYLSRF
Q9LD14______________MDKKSRVLIVGGTGYIGKRIVNASISLGHPTYVLFRPE-VVSNIDKVQMLLYFKQLGAKLIEASLDDHQRLVDALKQVDVVISALAGGVLSHHILEQLKLVEAIKEAGNIKRFLPSEFGMDPDIMEHALQPGSITFIDKRKVRRAIEAASIPYTYVSSNMFAGYFAGSLAQLDGHMMPPRDKVLIYGDGNVKGIWVDEDDVGTYTIKSIDDPQTLNKTMYIRPPMNILSQKEVIQIWERLSEQNLDKIYISSQDFLADMKDK--SYEEKIVRCHLYQIFFRGDLYNFEIG-PNAIEATKLYPEVKYVTMDSYLERY

SNPs (tot: 9)

Position	A %	C %	G %	T %	Probability
49		25		75	0.996473
59		50		50	1.0
61		25		75	0.996473
99	75		25		0.996473
118	75	25			0.996473
298		42		57	1.0
313	57		42		1.0
761		16	83		0.999991
1236		72		27	1.0

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain