SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene9924

Length: 1717 nt

Origin of reads: Biogeco_1 Uagpf Uma

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v1.1_unigene9924 (antisense)

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	cell division control protein 50	-	-	69%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	63%
Blast2go	cell division control protein 50	-	-	78%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NVU5

Fln msg: Overlapping hits, possible frame ERROR between 774 and 771,

Fln protein: MDGSGPSTSVAAAAAPRTASRRPKNSRFTQQDLPACKPYLTPAWVISLFMLIGIIFIPIGVSCLLASHSVVEILDRYETECIPEEYWSNKLAYIQSDSISKNCTRILRVPKHMKAPIYVYYQLDNFYQNHRRYVKSRSDKELLQGLKTKDIYRQNCVPEGYSNGLRIVPCGLIAWSLFNDTYQxxxL*SVELNVNKKGISWKSDREHKFGKDIYPYNFQNGTLIGGARLDPLIPLSEQEDLIVWMRTAALPTFRKLYGKIEVDLQANDYITVKIQNNYNVYSFGGKKSLVLSTTSWLGGKNDFMGKIYVVTGALCIFLALVFFILHIKVKYPRHYFSSNR*

Protein Length: 342

Fln nts: CGTCGTGACCTTGGCTGTCACTCAATTTTTTTGGTTGCCATTGACACCTTGTTCACATGCTTGGAAGCTCCACAGGAGCAGTTGCTTCATACCAAGACGGTCCTCCAATGACCAGGGAGATTGTCCCCATGAATTATCTTTTATTCCCAATGACAACGAAAGCGTTATGAAGACTGAAAAATTCGGGTCTGTTTCTTACAAATTATCGCTGTTGTTGCC_-_ATGGACGGTAGCGGCCCCAGCACTTCTGTTGCTGCTGCGGCTGCACCCAGAACAGCATCCCGGAGACCCAAGAATTCGAGGTTCACACAGCAGGATCTTCCTGCTTGTAAACCATATCTGACTCCAGCATGGGTCATCTCATTATTTATGCTGATTGGTATAATCTTCATCCCAATTGGAGTTTCTTGTCTCCTTGCATCTCACAGTGTGGTTGAAATTTTGGATCGATATGAGACTGAATGCATCCCAGAGGAGTACTGGAGTAACAAGTTGGCCTACATTCAAAGTGATTCTATTTCCAAGAATTGCACTAGAATCCTGAGGGTTCCCAAGCATATGAAGGCTCCAATTTATGTATATTACCAACTTGATAACTTCTACCAAAACCACCGACGGTATGTCAAAAGTAGAAGTGACAAAGAGTTGCTGCAGGGGCTGAAGACTAAGGATATATATAGGCAGAATTGTGTACCTGAAGGTTACTCAAATGGACTGCGAATCGTACCATGTGGCCTTATAGCTTGGAGCTTGTTTAATGACACTTACCAGxxxxxxxxxTTGTAGAGTGTTGAACTGAATGTAAATAAGAAAGGCATTTCTTGGAAGAGTGACAGAGAACATAAATTCGGAAAAGATATTTATCCTTACAATTTTCAGAATGGAACATTAATTGGTGGTGCGAGGCTAGATCCATTGATCCCTCTAAGTGAGCAAGAAGACCTTATTGTATGGATGCGCACAGCAGCACTTCCAACATTCAGAAAGTTGTATGGAAAGATTGAGGTGGACCTTCAAGCTAATGACTACATTACAGTGAAGATTCAAAATAACTATAATGTATATAGCTTTGGGGGAAAGAAAAGTTTGGTACTTTCCACCACAAGTTGGCTTGGAGGGAAAAATGATTTCATGGGGAAGATTTACGTTGTCACTGGGGCATTATGCATCTTTTTGGCATTGGTTTTCTTCATTTTGCATATTAAAGTTAAATACCCGAGGCATTATTTCTCATCAAACAGATAA___TGTAATTTGAGTGTCTTGTTATGTAGCTACTGTGAAAACAAGGTTGGTTTGTTGATATTTCTATGTTCTGTCACGTATGGGTGTGTCAATAATAAACAGTGAATCATAAACATGATAACAATAGATAGTCGGACATGCCACGTGTGGTGTCTTAGAATAGTTTCCACAACGTTAAAATCTGCTCCATTCTGCTCTCTCTGTTTCAAGGATTACATTATGTATATATGATACATCTGAATGTGATGCTTTCATTTCCTGGAAAAACTGAAGGATATCGTTGTCTTGTGTATTTAACTATCAAAAATCAGTTGGAAACATGAGATGCATAGTTGGCCTAATAATTTACATTTTATTTGATGTTGCAGACTCTTAGGCCTTGTATTCTCCAATCCGAGGTGATGGTAGGACATACATCTTTTGTGCTAAGGTTAAAAATTATATAAAGGTCCCATTGCATTGTATGATGGGGTCATATC

Fln Alignment:

sp_v1.1_unigene9924___KNSRFTQQDLPACKPYLTPAWVISLFMLIGIIFIPIGVSCLLASHSVVEILDRYETECIPEEYWSNKLA---YIQSDSISKNCTRILRVPKHMKAPIYVYYQLDNFYQNHRRYVKSRSDKELLQGLKTKDIYRQNCVPEGYSNGLRIVPCGLIAWSLFNDTYQxxL*SVELNVNKKGISWKSDREHKFGKDIYPYNFQNGTLIGGARLDPLIPLSEQEDLIVWMRTAALPTFRKLYGKIEVDLQANDYITVKIQNNYNVYSFGGKKSLVLSTTSWLGGKNDFMGKIYVVTGALCIFLALVFFILHI
A9NVU5______________KYSRFTQQELPACKPLLTPGWVITTFMLVGALFIPIGVISLVASHRVVEIVHQYETDCLPPQYRINKAAKVTYIKSD-MPKSCTQTLKVPKHMKRPIYVYYQLDNFYQNHRRYVKSRNDQQLMKAGSENE--TDSCKPEATTGSLPIVPCGLIAWSLFNDTYSxxKGNKPLIVNKKDISWKSDREHKFGKDVYPKNFQSGGLIGGAKLNASIPLSEQEDLIVWMRTAALPTFRKLYGRIEEDLQENDTIKVTLLNNYNTYTFNGKKKVVLSTTSFLGGKNNFLGIAYLTVGGLCFFLAMVFFLVHI

SNPs (tot: 47)

Position	A %	C %	G %	T %	Probability
265			50	50	1.0
474	27			72	1.0
575	84		15		0.999986
577		15	84		0.999986
578	16			83	0.999991
580	66		16	16	0.999991
581	66		33		1.0
582	16			83	0.999991
583		83	16		0.999991
586	36			63	1.0
588	18	63	18		0.999997
589	18	63	18		0.999997
591	18	18	18		0.999999
593			22	77	0.999999
595	77			22	0.999999
596	77	22			0.999999
598		22		77	0.999999
599		77	22		0.999999
601		22		77	0.999999
602			22	77	0.999999
1542		16		83	0.994512
1606		80	20		0.995493
1607	20	80			0.995493
1608		80	20		0.995493
1611	20		80		0.995493
1615			20	80	0.995493
1616		20		80	0.995493
1617		20	80		0.995493
1618	20		80		0.995493
1622	80			20	0.995493
1627	20			80	0.995493
1629			20	80	0.995493
1639	25		75		0.996473
1640		75	25		0.996473
1642	75	25			0.996473
1643	25	75			0.996473
1644	25			75	0.996473
1645	25		75		0.996473
1647		25		75	0.996473
1650	25			75	0.996473
1651	25		75		0.996473
1653	25		75		0.996473
1657	25		75		0.996473
1687		33	66		0.997452
1688		33	66		0.997452
1690	66	33			0.997452
1692		66		33	0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain