SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene9916

Length: 1558 nt

Origin of reads: Biogeco_1 Biogeco_2 Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene9916

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	aldehyde dehydrogenase (NAD)/3-chloroallyl aldehyde dehydrogenase (EC:1.2.1.27); K00128 aldehyde dehydrogenase (NAD+) [EC:1.2.1.3]	-	-	57%
FL-Next	sp=Aldehyde dehydrogenase; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	56%
Blast2go	aldehyde dehydrogenase	-	-	73%

Source	ECs	Term	Type	e value	Identity
AutoFact	Aldehyde dehydrogenase (NAD(+)).	EC:1.2.1.3	-	0.0	57%

Source	KEGGs	Term	Identity
AutoFact	Glycolysis / Gluconeogenesis	00010	57%
AutoFact	Pentose and glucuronate interconversions	00040	57%
AutoFact	Ascorbate and aldarate metabolism	00053	57%
AutoFact	Fatty acid metabolism	00071	57%
AutoFact	Valine, leucine and isoleucine degradation	00280	57%
AutoFact	Lysine degradation	00310	57%
AutoFact	Arginine and proline metabolism	00330	57%
AutoFact	Histidine metabolism	00340	57%
AutoFact	Tryptophan metabolism	00380	57%
AutoFact	beta-Alanine metabolism	00410	57%
AutoFact	Glycerolipid metabolism	00561	57%
AutoFact	Pyruvate metabolism	00620	57%
AutoFact	Chloroalkane and chloroalkene degradation	00625	57%
AutoFact	Propanoate metabolism	00640	57%
AutoFact	Limonene and pinene degradation	00903	57%
AutoFact	Metabolic pathways	01100	57%
AutoFact	Biosynthesis of secondary metabolites	01110	57%

Source	GOs	Term	Type	e value	Identity
Blast2go	protein binding	GO:0005515	Molecular Function	0.0	73%
Blast2go	endoplasmic reticulum	GO:0005783	Cellular Component	0.0	73%

Source	InterPros	Term	Type	Identity
Blast2go	Aldehyde dehydrogenase NAD(P)-dependent	IPR012394	-	73%
Blast2go	Aldehyde dehydrogenase domain	IPR015590	-	73%
Blast2go	Aldehyde/histidinol dehydrogenase	IPR016161	-	73%
Blast2go	Aldehyde dehydrogenase, N-terminal	IPR016162	-	73%
Blast2go	Aldehyde dehydrogenase, C-terminal	IPR016163	-	73%

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: B8LML9

Fln msg: your sequence is shorter than subject: 461 - 556

Fln protein: TQSLCWRKEQLQSVLHLMAENEKEILGALYSDLRKHPVESCRDEVGTVEKSARVALKHLHQWMAPTKVGIPLVAQFGSAAIMPEPLGVVLIFSAWNFPFNLAMDPMIGAIAAGNAVVLKPSEIAPATSELLATLIPRYLDNSAIKVVQGGIEESTQLLEHKWDKIFFTGSPRVGKIIMSAAAKHLTPVTMELGGKCPTIVDSILQKELVVTAKRIAFGKWVTNNGQACLSPDYLLVEEKFADTLIVALKKTIERFFGEDASTSGDLSRIVNQKQFLRLTKYLEDPSVAQSVVYGGKYDENKLYIQPTILLDPPLSSEIMNDEIFGPLLPVITLKRIEESIDFINSRPKPLCIYLFSNNKDLKERVVSETSSGSLAVNDTIVQFAIDTLPFGGVGESGFGKCHGKFSFDTFSHPKAILYRGLFPDFAPRYPPWNDFKLSFVKAILQFDYFKLILLCLGLKK*

Protein Length: 462

Fln nts: GACACAATCACTGTGTTGGAGGAAGGAGCAACTCCAGTCTGTGCTCCATTTGATGGCTGAGAATGAAAAAGAGATACTGGGGGCGCTTTACTCTGACTTGCGCAAGCACCCTGTAGAGTCCTGCAGAGATGAGGTTGGGACTGTAGAAAAATCGGCTAGGGTTGCACTCAAACACTTGCATCAATGGATGGCTCCTACAAAGGTGGGCATACCGCTCGTGGCTCAGTTTGGTTCTGCTGCCATAATGCCAGAACCTCTTGGTGTGGTTTTGATATTTTCTGCTTGGAACTTTCCATTCAACTTGGCCATGGATCCGATGATAGGAGCAATTGCAGCTGGGAATGCGGTTGTTTTAAAGCCCTCTGAAATCGCTCCTGCCACATCAGAACTTCTTGCAACACTCATCCCCAGATATTTAGACAACAGTGCTATTAAAGTTGTTCAAGGAGGAATTGAGGAGAGCACTCAGCTGTTAGAGCACAAGTGGGACAAGATATTCTTCACTGGAAGCCCCAGAGTGGGAAAAATTATTATGTCTGCTGCTGCAAAACATCTAACGCCGGTGACTATGGAATTGGGTGGAAAGTGCCCAACAATTGTGGACTCCATTCTCCAAAAGGAGCTGGTGGTAACTGCAAAGCGAATAGCATTTGGAAAATGGGTGACTAATAACGGGCAAGCATGCCTCTCGCCTGACTACCTCCTTGTTGAAGAGAAATTTGCAGACACTTTGATAGTCGCTCTGAAGAAAACTATAGAAAGATTCTTTGGGGAGGATGCAAGCACCAGTGGCGATCTTTCCAGAATAGTGAATCAGAAACAATTTTTGAGGTTGACAAAATATTTGGAGGATCCCTCCGTTGCGCAATCTGTAGTGTACGGTGGCAAATACGACGAGAACAAATTGTATATCCAACCAACAATTTTGCTTGATCCGCCATTGTCATCCGAAATAATGAATGATGAAATCTTCGGACCTTTGCTTCCTGTGATTACATTGAAGAGAATTGAAGAAAGTATAGACTTCATCAATTCAAGGCCAAAACCACTGTGTATCTATCTTTTCTCCAACAACAAAGATCTGAAGGAAAGAGTTGTATCTGAAACATCATCTGGGAGCCTGGCAGTGAATGATACTATTGTTCAGTTTGCTATAGACACACTGCCTTTTGGAGGAGTGGGAGAGAGTGGTTTTGGAAAGTGTCATGGCAAGTTTTCATTTGATACCTTCAGCCATCCAAAGGCGATTCTATATAGAGGACTTTTTCCAGACTTCGCCCCAAGATATCCTCCTTGGAATGACTTCAAACTGAGCTTTGTGAAGGCAATTTTACAGTTCGACTATTTTAAGTTGATTTTGTTATGCTTAGGCCTCAAAAAGTGA___AGCCAGTTTACTTTGTTTAAAGTGTGCAGCCTGGTAATGGATGCATGCAGCATTCTATAACGAGATTCAGTTCTCCTTGATTAATTACAAAGCATCTCTATTGGTTTTGAAATTACTATTATTTAGTGACATTTTTATGATTGTAAGCACAATATATGGTAACTGATTTTCAAT

Fln Alignment:

sp_v1.1_unigene9916___TQSLCWRKEQLQSVLHLMAENEKEILGALYSDLRKHPVESCRDEVGTVEKSARVALKHLHQWMAPTKVGIPLVAQFGSAAIMPEPLGVVLIFSAWNFPFNLAMDPMIGAIAAGNAVVLKPSEIAPATSELLATLIPRYLDNSAIKVVQGGIEESTQLLEHKWDKIFFTGSPRVGKIIMSAAAKHLTPVTMELGGKCPTIVDSILQKELVVTAKRIAFGKWVTNNGQACLSPDYLLVEEKFADTLIVALKKTIERFFGEDASTSGDLSRIVNQKQFLRLTKYLEDPSVAQSVVYGGKYDENKLYIQPTILLDPPLSSEIMNDEIFGPLLPVITLKRIEESIDFINSRPKPLCIYLFSNNKDLKERVVSETSSGSLAVNDTIVQFAIDTLPFGGVGESGFGKCHGKFSFDTFSHPKAILYRGLFPDFAPRYPPWNDFKLSFVKAILQFDY
B8LML9______________TRSYEWRMSQLEQILKLTDENQTQITEALHQDMGKPVFESFISEISLTKSSCKVAIKELKSWMTPQKVSTTITVFPSSAEIVPEPLGAVLIISAWNYPFLLSMDPVIGAIAAGNVVVLKPSEVAPATSSLLARLIPRYLDNSAVRVVEGSVVETTSLLEQKWDKIFYTGSGKIGRIVMAAAAKHLTPVTLELGGKCPVIVDPTV--DLEVTARRIIAGKWGSNNGQACISPDYVITLESFAPKLIDALKVTLEKFFGKDPFQSADLSRIVNFSHFARLTRLLDDPKVSDKVIYGGQRDEKRLIIAPTLLLDAPMDSLIMTEEIFGPLLPIITVQKMEEALEVVSSLPKPLAAYLFTKNKMFERQVVASISAGGMVVNDTALHLVNHHLPFGGVGESGMGAYHGKFSFENFSHRKAVLYRGFMGDLMARYPPYTRRKQKIVRCLLNGDF

SNPs (tot: 9)

Position	A %	C %	G %	T %	Probability
154	33		66		1.0
370	16	83			0.994512
386	33		66		1.0
1312		18	81		1.0
1315		81		18	1.0
1388		85		14	0.993533
1395		42		28	1.0
1416			12	87	0.992554
1421	87		12		0.992554

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain