SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene9909

Length: 2563 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

>sp_v1.1_unigene9909
CGTCGTGACCTTGGCTGTCACTCAAATCCATCTAACGATCCACTCTTGGCAGCAATGCTGGCCGAGTTACTCACAGGTTTTCACTCTATCCCCAGCAAGCCCCTTCAATAACGCAGTAAGGGCTCTGTGAGTAAACGATACCCAATATGTCCACATGACCTCAAAAGCCACTCAATTTTCAGCTCCCAGAAATGCAAAACATTAATACTACAACAGGCTCCAATGCCTGCACCTCCTTCCTCGCCGCACAACTGTGGAGTCCTCTGCTCAACAAAAGAGTAAGAAAATCTGACATTACGTTCAAATTTCAGCTGAGAAAGCCACGGCTTTCACGAATTAGATTTAATTTCCACTGTGGTTACGCTTCATGTAACCTCAGCCATTCTCCAAGTCATGAACCGGCTGAGAGGGAGCCCCTGCAATTTTGCTGGAGGGATTTCAATTTGCAACAAGCAAAAAATGCTGGCCTTGGGCTCGCAGTGATTGTCGCTGCGATTGTTGCATATCTTTGTAGAACAAACCCCAGGGCCATGAAGAAATGGTCCCTCATCTCTCAACTTAACTGGCATACTTCTTTTGATGTACATGTTCCGGAGGTGCAGGAAGATGATTTACCCTTAGAACCCCCTCAATTCCAGTTCCAGGCATTAAGTTCAGTATTTTCTGCATATGGCAGGGACGAGAATGCCCAACAGCCTGCGTATATTATTCAGAATTCTTTGTGGACATTGCCGGTGCATCTGGACGGTGCTGGGAAGAAGAAGAGGGAATCCAAGTTTGCTAGGAAGATGAAAAATATTTCAAATGAATCACTTCAGCTCGCAAGCAAATTGAACGAGGGACAAGGCGGAATGGATGGAGCAAATGTGGATAGCACTGAGAGTTGGTTGTATGAGTTGAAAGAGGAGGCCCTTCGAAGGGGTGTAAAAAGTGAAGTGATTGAAAGAGCATTTGAAGGTATAAAAATCTCTGAGGAAATTTTGGAGATAGATCAGAACCGGCCAGAGGTGAAGCTTACAGTAGAGGAATATCTGAACAGAATGGTGACTGATGAAAGGGTGTCAAAAGGAGTAAAGGCTTTTAGGGAAAATAAGGCACTGCTAGAAGAGATTTCGTTGAAATATGGAGTTCCTGCTCCACTTCTTGTTGCTATTTGGGGGATTGAAAGCAGTTATGGAGCATATACAGGCAATTGGGATACTATTGAAGCTCTCATTACTATGTCATATGGAAGGCAAAAGTCTGAAAAATCTAAATATTTTAGGGAGGAGATATTTAGTGCACTCGCTATAATTGAGCAAGGGCATGGGCCTCCTGGGGAAAAAAGATTGCAAGGTTCCTATGCTGGAGCAATGGGGCAATGTCAATTCATGCCATCAAGTTTTCTGTCCTATGCTGTGGATTATGATGGAGATGGTCATACAGACATTTGGGAGTCCCATGCTGATATCTTGGCATCAATTGCTAATTATCTTCTGAAGCATGGATGGAAGGAGGGGCACCCCATTGCTCAGAAGGTGTCTTTAGGGAAAGATATTGACCAGTCTTTCTTGGGGTTGGATGTCAAGAAGTCTGTATCTGAGTGGAAGAATGATTACCAAGTGACAGTGGTAGAAGGTGAACCAGAAGTCTCTCCAAATGAAATAGCAAGCCTGATTGCTCCTGATGGACTACAGGCCGATGTCTACCTTGTCTATGATAACTTCCGAACCATTATGCGCTATAATATATCAGTTCTTTATTCAATATCAGTTAATTATCTTACACACAAGATAATTAGTCAATTGCCTCAAGAGTAATAAGATCAGTTTATTCTCTCCTTGCAGCTGAATAGGAAACATTTTTTCCTTGATCGTATTTCTTCCCCAGTAGGACTGCCTCCCTAATTGTTAGGGCTTTGAATTAAATGAAATAATCATTTTGTGTCTGTGAGGGTTTTGAATTAAATTAAATAATCATTTTGTGTCTGTGAATTGGGTTTATTTCGGGTGGTTGGGGAAGGATTGATATCCCCCCATTCATATTCATATTCAGATTCTATTCTCAGTTCTCACAAGTGAAACTTTCTTGTTATGGTTCAAACCTTGTTGTTGAGCATGAAGACTTCGTTGACAACCAAAACATTTATATTGAAAAATATTAATAATAACTTTGTTTAAGGTATCGTGATCCCTGCTGTATCCACTTTGTTTTAAACGCTGTGGATGAAAGGAAGAGAATGCGTTGTCAAAAGGCATACTACAATCAACTCAAATCATTTCATGGTTCGAAATTCAATTATTGCAATGCGGCAATGAGCTGTGTCTTACATGATACATGAAAAATGGGACTTAAAGCAAATGCTATTGTTACTATGATGATATAATGTATGACTTAATGTTCATGATTAGTCCCTCCCTCTTGCGGAGGACAAGAGGATAAAATGGAACTTAAGGCAAATGCTATTTACTATGACGATATAATGTATAACATAATGTTCATTATTAGTCCCTCCCTCTTGCAGAGGACTATACCTTTGTACCTGAAGTTAAATTCTTTTCTTTTTATTTAATTGTTTAAATTT

Ace file of the UniGene sp_v1.1_unigene9909

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	membrane-bound lytic murein transglycosylase; K08305 membrane-bound lytic murein transglycosylase B [EC:3.2.1.-]	-	-	40%
FL-Next	tr=Putative uncharacterized protein; Selaginella moellendorffii (Spikemoss).	-	-	51%
Blast2go	lytic murein transglycosylase	-	-	64%

Source	ECs	Term	Type	e value	Identity
AutoFact	Hydrolases, Glycosylases, Glycosidases, i.e. enzymes hydrolyzing O- and S-glycosyl compounds.	EC:3.2.1.-	-	0.0	40%

Source	KEGGs	Term	Identity
AutoFact	Ascorbate and aldarate metabolism	00053	40%
AutoFact	Ubiquinone and other terpenoid-quinone biosynthesis	00130	40%
AutoFact	Amino sugar and nucleotide sugar metabolism	00520	40%
AutoFact	Glycosaminoglycan degradation	00531	40%
AutoFact	Metabolic pathways	01100	40%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Lytic murein transglycosylase	IPR011970	-	0.0	64%
Blast2go	Lysozyme-like domain	IPR023346	-	0.0	64%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: tr_plants

Fln subject: D8SPF8

Fln msg: your sequence is longer than subject: 536 - 450

Fln protein: MQNINTTTGSNACTSFLAAQLWSPLLNKRVRKSDITFKFQLRKPRLSRIRFNFHCGYASCNLSHSPSHEPAEREPLQFCWRDFNLQQAKNAGLGLAVIVAAIVAYLCRTNPRAMKKWSLISQLNWHTSFDVHVPEVQEDDLPLEPPQFQFQALSSVFSAYGRDENAQQPAYIIQNSLWTLPVHLDGAGKKKRESKFARKMKNISNESLQLASKLNEGQGGMDGANVDSTESWLYELKEEALRRGVKSEVIERAFEGIKISEEILEIDQNRPEVKLTVEEYLNRMVTDERVSKGVKAFRENKALLEEISLKYGVPAPLLVAIWGIESSYGAYTGNWDTIEALITMSYGRQKSEKSKYFREEIFSALAIIEQGHGPPGEKRLQGSYAGAMGQCQFMPSSFLSYAVDYDGDGHTDIWESHADILASIANYLLKHGWKEGHPIAQKVSLGKDIDQSFLGLDVKKSVSEWKNDYQVTVVEGEPEVSPNEIASLIAPDGLQADVYLVYDNFRTIMRYNISVLYSISVNYLTHKIISQLPQE*

Protein Length: 537

Fln nts: CGTCGTGACCTTGGCTGTCACTCAAATCCATCTAACGATCCACTCTTGGCAGCAATGCTGGCCGAGTTACTCACAGGTTTTCACTCTATCCCCAGCAAGCCCCTTCAATAACGCAGTAAGGGCTCTGTGAGTAAACGATACCCAATATGTCCACATGACCTCAAAAGCCACTCAATTTTCAGCTCCCAGAA_-_ATGCAAAACATTAATACTACAACAGGCTCCAATGCCTGCACCTCCTTCCTCGCCGCACAACTGTGGAGTCCTCTGCTCAACAAAAGAGTAAGAAAATCTGACATTACGTTCAAATTTCAGCTGAGAAAGCCACGGCTTTCACGAATTAGATTTAATTTCCACTGTGGTTACGCTTCATGTAACCTCAGCCATTCTCCAAGTCATGAACCGGCTGAGAGGGAGCCCCTGCAATTTTGCTGGAGGGATTTCAATTTGCAACAAGCAAAAAATGCTGGCCTTGGGCTCGCAGTGATTGTCGCTGCGATTGTTGCATATCTTTGTAGAACAAACCCCAGGGCCATGAAGAAATGGTCCCTCATCTCTCAACTTAACTGGCATACTTCTTTTGATGTACATGTTCCGGAGGTGCAGGAAGATGATTTACCCTTAGAACCCCCTCAATTCCAGTTCCAGGCATTAAGTTCAGTATTTTCTGCATATGGCAGGGACGAGAATGCCCAACAGCCTGCGTATATTATTCAGAATTCTTTGTGGACATTGCCGGTGCATCTGGACGGTGCTGGGAAGAAGAAGAGGGAATCCAAGTTTGCTAGGAAGATGAAAAATATTTCAAATGAATCACTTCAGCTCGCAAGCAAATTGAACGAGGGACAAGGCGGAATGGATGGAGCAAATGTGGATAGCACTGAGAGTTGGTTGTATGAGTTGAAAGAGGAGGCCCTTCGAAGGGGTGTAAAAAGTGAAGTGATTGAAAGAGCATTTGAAGGTATAAAAATCTCTGAGGAAATTTTGGAGATAGATCAGAACCGGCCAGAGGTGAAGCTTACAGTAGAGGAATATCTGAACAGAATGGTGACTGATGAAAGGGTGTCAAAAGGAGTAAAGGCTTTTAGGGAAAATAAGGCACTGCTAGAAGAGATTTCGTTGAAATATGGAGTTCCTGCTCCACTTCTTGTTGCTATTTGGGGGATTGAAAGCAGTTATGGAGCATATACAGGCAATTGGGATACTATTGAAGCTCTCATTACTATGTCATATGGAAGGCAAAAGTCTGAAAAATCTAAATATTTTAGGGAGGAGATATTTAGTGCACTCGCTATAATTGAGCAAGGGCATGGGCCTCCTGGGGAAAAAAGATTGCAAGGTTCCTATGCTGGAGCAATGGGGCAATGTCAATTCATGCCATCAAGTTTTCTGTCCTATGCTGTGGATTATGATGGAGATGGTCATACAGACATTTGGGAGTCCCATGCTGATATCTTGGCATCAATTGCTAATTATCTTCTGAAGCATGGATGGAAGGAGGGGCACCCCATTGCTCAGAAGGTGTCTTTAGGGAAAGATATTGACCAGTCTTTCTTGGGGTTGGATGTCAAGAAGTCTGTATCTGAGTGGAAGAATGATTACCAAGTGACAGTGGTAGAAGGTGAACCAGAAGTCTCTCCAAATGAAATAGCAAGCCTGATTGCTCCTGATGGACTACAGGCCGATGTCTACCTTGTCTATGATAACTTCCGAACCATTATGCGCTATAATATATCAGTTCTTTATTCAATATCAGTTAATTATCTTACACACAAGATAATTAGTCAATTGCCTCAAGAGTAA___TAAGATCAGTTTATTCTCTCCTTGCAGCTGAATAGGAAACATTTTTTCCTTGATCGTATTTCTTCCCCAGTAGGACTGCCTCCCTAATTGTTAGGGCTTTGAATTAAATGAAATAATCATTTTGTGTCTGTGAGGGTTTTGAATTAAATTAAATAATCATTTTGTGTCTGTGAATTGGGTTTATTTCGGGTGGTTGGGGAAGGATTGATATCCCCCCATTCATATTCATATTCAGATTCTATTCTCAGTTCTCACAAGTGAAACTTTCTTGTTATGGTTCAAACCTTGTTGTTGAGCATGAAGACTTCGTTGACAACCAAAACATTTATATTGAAAAATATTAATAATAACTTTGTTTAAGGTATCGTGATCCCTGCTGTATCCACTTTGTTTTAAACGCTGTGGATGAAAGGAAGAGAATGCGTTGTCAAAAGGCATACTACAATCAACTCAAATCATTTCATGGTTCGAAATTCAATTATTGCAATGCGGCAATGAGCTGTGTCTTACATGATACATGAAAAATGGGACTTAAAGCAAATGCTATTGTTACTATGATGATATAATGTATGACTTAATGTTCATGATTAGTCCCTCCCTCTTGCGGAGGACAAGAGGATAAAATGGAACTTAAGGCAAATGCTATTTACTATGACGATATAATGTATAACATAATGTTCATTATTAGTCCCTCCCTCTTGCAGAGGACTATACCTTTGTACCTGAAGTTAAATTCTTTTCTTTTTATTTAATTGTTTAAATTT

Fln Alignment:

sp_v1.1_unigene9909___QLASKLNEGQGGMDGANVDSTESWLYELKEEALRRGVKSEVIERAFEGIKISEEILEIDQNRPEVKLTVEEYLNRMVTDERVSKGVKAFRENKALLEEISLKYGVPAPLLVAIWGIESSYGAYTGNWDTIEALITMSYGRQKSEKSKYFREEIFSALAIIEQGHGPPGEKRLQGSYAGAMGQCQFMPSSFLSYAVDYDGDGHTDIWESHADILASIANYLLKHGWKEGHPIAQKVSLGKDIDQSFLGLDVKKSVSEWKNDYQVTVVEGEPEVSPNEIASLIAPDGLQADVYLVYDNFRTIMRYNISVLYSISVNYLTHKI
D8SPF8______________QIHVKINQIPVEMSTPESDIS-AWLEDLKEEAIQRGVGKDTVLEAFDGVKISPKIMEKDQTQPEKTLTAEDYIKTMVSQSRVSRGVQAFVDNKALLEEISAEYGVPASLLVSIWGIESNYGSYTGSWNVIQALVTLAFDSPEARRRAFFRDEVFHALFILDKAEGPSNAAGLKGSWAGAMGQCQFMPSSFRNYAVDFDRDGRKDIWSSKADIFASIANYLAEHGWEIGGKYAQKVKIPSDMDKSVYGLDIKKNVNRWLEENTITACDGS-QLSGDEPVSLVAPDGPSGVAYLVWENFRVVMRYNISILYSLAVYELAEEI

SNPs (tot: 40)

Position	A %	C %	G %	T %	Probability
282	25	75			0.996473
327		28		71	1.0
354		71		28	1.0
364	63	36			1.0
389		20		80	0.999996
402		80		20	0.999996
661		10		90	0.90298
998	75	25			0.996473
1000	75			25	0.996473
1001	75	25			0.996473
1002		75	25		0.996473
1003		75		25	0.996473
1005	25		75		0.996473
1008	75			25	0.996473
1009			75	25	0.996473
1010	75		25		0.996473
1012		25	75		0.996473
1015	75			25	0.996473
1016	75	25			0.996473
1017	25		75		0.996473
1020		25		75	0.996473
1195	66		33		1.0
1294	87		12		0.992554
1363		85	14		0.993533
1364	85	14			0.993533
1370	85	14			0.993533
1446	83		16		0.994512
1483	14		85		0.993533
1522			88	11	0.923564
1524			11	88	0.923564
1627	87		12		0.992554
1770		90		10	0.90298
1825		88		11	0.923564
1844		83		16	0.994512
1866		60	40		1.0
1874	20		80		0.995493
1938			66	33	1.0
1939			66	33	1.0
2101		66		33	0.997452
2213	75		25		0.996473

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain