SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene9893

Length: 1912 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v1.1_unigene9893 (antisense)

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Whole genome shotgun sequence of line PN40024, scaffold_57.assembly12x (Fragment) n=1 Tax=Vitis vinifera RepID=D7TD97_VITVI	-	-	38%
FL-Next	tr=Putative uncharacterized protein; Vitis vinifera (Grape).	-	-	38%
Blast2go	protein	-	-	47%

Source	GOs	Term	Type	e value	Identity
Blast2go	intracellular part	GO:0044424	Cellular Component	0.0	47%

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: tr_plants

Fln subject: D7TD97

Fln msg: Unexpected stop codon in the beginning of your sequence, your sequence is shorter than subject: 479 - 896

Fln protein: SVQAS*PWLSLIPEASQEAEEPKEEHPSRQSKAAPFVPSEGYSHHPKEYYSHCSEVYSHHLQTSTSTIEIISSSTDDGQMTLSPTTGSLPKPFKQEPVAASGSQFSLLQNAMNYTNMESMTQFMQNKPYEPAESHQQDVSHLPSFPQAHDPSSSFYTRFLIPGLEGDTRFSPLVSSTSGSNYNGNHPLLSGQSGVSSQEAGNSVVPSTTDPAHVMQKSGTIQARISPQQQPMAVFPQSVGVNTCQFPSNYLPYHQYLSALYAPGTVHGFTDNPGYSPRQSGSNYNLAAGSSYPLSAAAVKYSLSQHKPDTVSGNTLHGAFPMGYSSYSTPAGYAVNPAATGGSGSSFDDIAGPQFKETNLYLPSQQAEGSRLWIQSPARDLSGMQTSSCYMSAQAQHSAYAATQSTHAAFAPTQSGHAVYAPTQSGHSTYGRYHSMQPELAPNLDNLLHLSQALGGASGQIGAYKEVNHGQLNWTNNF*

Protein Length: 480

Fln nts: TCAGTTCAAGCGTCGTGACCTTGGCTGTCACTCATACCAGAAGCATCCCAGGAAGCCGAGGAACCAAAGGAAGAACATCCTTCAAGACAATCAAAAGCAGCACCATTTGTTCCAAGTGAGGGTTATTCACATCATCCAAAAGAGTATTATTCACACTGCAGTGAGGTTTATTCACATCACCTGCAGACGTCTACAAGTACGATAGAGATCATTTCTAGCAGCACTGATGATGGTCAAATGACTCTCTCTCCAACTACTGGTTCACTGCCTAAACCATTCAAACAAGAGCCAGTTGCTGCATCTGGCTCACAGTTTTCTCTTCTTCAAAATGCAATGAATTATACAAATATGGAGTCAATGACACAATTTATGCAGAATAAACCTTATGAACCAGCAGAGTCACATCAGCAAGATGTTTCTCACTTACCAAGCTTTCCGCAAGCACATGATCCCTCGTCTAGCTTTTACACTCGATTTTTAATACCTGGCTTGGAAGGAGATACTCGCTTTTCTCCACTTGTCAGTTCTACATCTGGAAGCAATTACAATGGAAATCATCCATTATTATCCGGACAAAGTGGAGTGTCATCACAGGAGGCTGGAAATTCTGTGGTACCATCAACTACAGATCCTGCTCATGTAATGCAAAAATCTGGAACAATACAGGCTAGAATTTCTCCACAGCAACAGCCAATGGCGGTGTTTCCCCAATCTGTCGGTGTGAATACTTGTCAGTTTCCTTCCAATTACCTCCCTTATCATCAGTATCTCTCTGCGCTATATGCTCCAGGAACAGTTCATGGCTTCACAGACAACCCTGGATATTCTCCACGTCAGAGTGGGAGCAATTATAATCTGGCTGCCGGTAGCTCATATCCTCTATCTGCTGCAGCTGTAAAATACTCTCTCTCTCAGCATAAGCCAGACACTGTCAGTGGGAACACTCTTCATGGGGCTTTTCCCATGGGATATAGTAGTTATAGCACTCCTGCAGGATATGCTGTGAATCCTGCAGCAACTGGAGGGAGTGGATCTAGCTTTGATGACATTGCTGGACCTCAGTTTAAGGAAACTAATCTATACCTTCCAAGTCAGCAGGCTGAAGGCTCTAGACTCTGGATACAGTCACCTGCCCGAGACCTTTCTGGCATGCAAACAAGCTCATGCTACATGTCAGCTCAAGCACAACATTCAGCGTATGCAGCAACACAGTCTACACATGCAGCTTTTGCACCCACACAGTCTGGGCATGCAGTATATGCACCCACACAGTCTGGCCATTCAACATATGGTAGATATCATTCAATGCAGCCTGAGTTGGCTCCAAATTTGGATAATTTGCTTCACCTATCACAGGCTTTAGGAGGAGCTAGTGGTCAGATAGGAGCATACAAGGAAGTAAATCATGGTCAACTAAACTGGACTAACAATTTCTGA___CACATTGAAGCTAACCCACGTGCTCGATTTGACAGAGCTAGGTGCTGTAAATGGGGAAGATATTGAATTCAATGATGACGGCTCTGACATAGGGCCGTTAGGAGTGTATATAATAAGTTACAGATTGATACCTAGATAGTGAAAGAGAGCCAGTTTAATGGTTTGGATTTTAAATATTCAAAGTCGGAGTCGGACTTCCTTGGCAGCAAGTGAATACCCAATCATGGCTCTCATGTCGCACCATTGTTTTATATCTGATGCCATATTAATTGAGGTGTGTGTTGGTTGTGCATTTGTATTATGGTTAGTGAAGGTTCATTTTTTTCTCCTTGTTAAGCATGAATTTAAGGTATAATGTATAAGCAGGTCTTGGCCTGGCAATAAATTGCTAACACAGACAAGCTAACCACATAGCTGTATTAGCAACACTAGCCTGTTGCTTGAATTTCGTAAGGTCACTTTAGTCAGCTACTAA

Fln Alignment:

sp_v1.1_unigene9893___TTGSLPKPFKQEPVAA--SGSQFSLLQNAMNYT-NMESMTQFMQNKPYEPAESHQQDVSHLPSF---PQAHDPSSSFYTRFLIPGLEGDTRFSPLVSSTSGSNYNGNHPLLSGQSGVSSQEAGNSVVPSTTDPAH-VMQKSGTIQARISPQQQPMAVFPQSVGVNTCQFPSNYLPYHQYLSALYAPG-TVHGFTDNPGYSPRQSGSNYNLAAGSSYPL----SAAAVKYSLSQHKPDTVSGNTLHGAFPMGYSSY-STPAGYAVNPAATGGSGSSFDDIAGPQFKETNLYLPSQQAEGSRLWIQSPARDLSGMQTSSCYMSAQAQHSAYAATQSTHAAFAPTQSGHAVYAPTQSGHSTYGRYHSMQPELAPNLDNLLHLSQALGGASGQIG----AYKEVNHGQLNWTNNF
D7TD97______________SSSSAPEYDSKQEIALPPGGHQYSTVHTSPNYSFGFVPPILGSQLAPFESSESQARDVTRLPSFVVQPQ-FDPAS-YYAQFYRSGSDSDGRISPFQSPGVVPKYNGNVAVLSPQTSQSPQEGGNSLVLSTAGATPLVTQSAGVMQSSIAVTQQPVPVFRQP-GVHIPHYPPNYIPYGHYFSPFYVPPPAIHQFLAN-GAFPHQP------QAGGVYPAPPNAAAAGVKYSLPQYKPGTNTGNSAHMGMPGGYGPYGSSPAGYNPSSAAAAGNSTANEEIAASQFKENSVYITGQQSEGSAVWIAAPGRDISGLPASSFY---------NLPPQSQHVAFTPTQGGHGPIA---------GIYHPAQAVTA-TVHPLLQQSQTMAGAVDMVGPTGSVYQQPQHAQINWPNNY

SNPs (tot: 45)

Position	A %	C %	G %	T %	Probability
339	25	75			0.996473
553		10		90	0.90298
554	90	10			0.90298
555	90	10			0.90298
557			90	10	0.90298
712	10			90	0.90298
715	90	10			0.90298
716	10			90	0.90298
718		90	10		0.90298
721	10			90	0.90298
722		10	90		0.90298
723	90		10		0.90298
725		10		90	0.90298
743	88		11		0.923564
746		11		88	0.923564
751	11			88	0.923564
753	88		11		0.923564
754			87	12	0.992554
756	12			75	0.975346
757		12		87	0.992554
760	12			87	0.992554
761		12		87	0.992554
821		20		80	0.995493
842	75	25			0.996473
843		25	75		0.996473
844	25			75	0.996473
845	25			75	0.996473
960	25		75		0.996473
1061	75		25		0.996473
1083		66		33	1.0
1229		16		83	0.994512
1230		16		83	0.994512
1231		16	83		0.994512
1232	16	83			0.994512
1278		20		80	0.995493
1301		20		80	0.995493
1381		75		25	0.996473
1609	71		28		1.0
1667	71		28		1.0
1766	85	14			0.993533
1767		14		85	0.993533
1768	85	14			0.993533
1886	66			33	0.997452
1887		33	66		0.997452
1892		66		33	0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain