SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene9882

Length: 1642 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene9882

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Galactomannan galactosyltransferase n=1 Tax=Senna occidentalis RepID=Q564G6_9FABA	-	-	48%
FL-Next	sp=Putative glycosyltransferase 7; Arabidopsis thaliana (Mouse-ear cress).	-	-	47%
Blast2go	galactomannan galactosyltransferase	-	-	67%

Source	GOs	Term	Type	e value	Identity
Blast2go	Golgi apparatus	GO:0005794	Cellular Component	0.0	67%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: sp_plants

Fln subject: O81007

Fln msg:

Fln protein: MKRRKQNGERLNDGLTFMGGAVSALLLVWAFWRIGYTNSSMEMETELSVSPKCPDPCFSNRNSGSTGRNRADHSVDEWEKSSENFYNNPEVTYTIGQPIRDWDRKRKLWLDRHPQVKNFTDDGKPRVLMVSGSQAVPCRNPIGDHLLLRFFKNKVDYCRIHGIDIFYNNVLLEEHMTTFWAKIPLVRAAMVAHPEAEWIWWMDSDAAITDMDFVIPWERYRDYNLVVHGWDHLVYEKQSWVSLNAGIFLIRNCEWSIEFMERWSVMGPQSPLYVSSGKLLSKVLSDRAFNNSDDQSAIVYLLLKEKDKWADRIFIEHKYYLNGYWIDIVGTYENITEKYEAMEKENPMLNKRHAEKMNRDYAEMREHHMRDNKNFYSDNDDIMVRRRRPFVTHFTGCQPCSGDHNKNYKGENCWKGMERALNFADDQMLKNYGFRHDNLQSSHVNPIQSFYFPS*

Protein Length: 456

Fln nts: CGTCGTGACCTTGGCTGTCACTCAGTTTTCTGAATCGCATACACATGCATGCATAAAGTGAATATGTGTACTGAATGGCTGTAAATTACTGAAGACTTTTGGATCAGGGTGCAGGCGCAGCAGCAGAAATAAAGTGCCACCTTCCCTGCCATGTGTTGGAGAGTATCAGTGAGGGTTCTTAAGGGTTCGTGACCATAGCGATCAATCAGAGGATGTGCTTTGCAAGGGCCATTTACATGGAAGGCCATTGAAGGGTCCC_-_ATGAAAAGACGGAAGCAAAATGGGGAGAGATTGAATGATGGGCTTACATTCATGGGAGGTGCCGTTTCAGCACTGTTGCTTGTATGGGCTTTCTGGAGAATTGGGTATACAAATTCAAGCATGGAAATGGAAACAGAGCTCTCTGTTTCCCCAAAATGCCCTGACCCGTGTTTCAGTAATAGGAATAGTGGGAGTACTGGTAGGAACAGAGCTGATCACAGTGTTGATGAATGGGAGAAGAGTTCTGAGAATTTTTACAACAATCCTGAAGTCACTTACACCATTGGACAACCAATTAGAGACTGGGACAGGAAGAGAAAGCTGTGGCTTGACAGACACCCACAAGTGAAAAACTTCACTGATGATGGGAAACCGAGGGTTTTAATGGTGTCTGGGTCTCAGGCTGTCCCTTGCAGGAACCCCATTGGAGATCATCTGCTTCTAAGGTTCTTCAAGAACAAGGTGGACTACTGCAGAATCCATGGGATTGATATATTTTACAATAATGTGCTGTTGGAAGAGCACATGACCACTTTCTGGGCCAAGATTCCTTTGGTGAGGGCAGCCATGGTGGCTCACCCAGAGGCAGAATGGATCTGGTGGATGGACTCTGACGCAGCCATCACAGACATGGATTTTGTGATTCCATGGGAGAGGTATAGGGATTACAACCTGGTAGTACATGGCTGGGATCATCTGGTGTATGAGAAGCAAAGCTGGGTGAGCCTGAATGCAGGGATTTTCCTCATCAGGAACTGTGAGTGGTCGATAGAGTTCATGGAGCGGTGGTCTGTGATGGGCCCCCAGAGCCCTCTGTATGTTTCATCGGGAAAGCTGCTGTCTAAGGTTCTGTCTGATAGGGCTTTCAATAATTCAGATGACCAGTCTGCCATTGTTTACCTGCTGCTCAAGGAGAAGGACAAGTGGGCTGATAGGATTTTCATAGAGCACAAATATTATCTCAATGGATACTGGATCGATATTGTGGGGACTTATGAGAACATCACAGAGAAGTATGAGGCCATGGAGAAGGAGAACCCAATGTTGAATAAGAGGCATGCAGAGAAAATGAACAGGGATTATGCAGAGATGAGGGAGCACCACATGCGGGATAATAAGAATTTTTATAGTGATAATGATGATATAATGGTGAGGAGGAGGAGGCCATTTGTGACACATTTTACAGGGTGCCAGCCCTGCAGTGGAGACCACAATAAGAATTATAAAGGCGAGAATTGTTGGAAGGGGATGGAGAGGGCCTTGAATTTTGCAGATGATCAGATGCTCAAAAACTATGGCTTCAGACATGATAATCTCCAGTCTTCCCATGTAAATCCTATTCAATCATTTTATTTCCCATCTTGA___ATGGCCCAAAATCTGTCA

Fln Alignment:

sp_v1.1_unigene9882___LNDGLTFMGGAVSALLLVWAFWRIGYTNSSMEMETELSVSPKCPDPCFSNRNSGSTGRNRADHSVDEWEKSSENFYNNPEVTYTIGQPIRDWDRKRKLWLDRHPQVKNFTDDGKPRVLMVSGSQAVPCRNPIGDHLLLRFFKNKVDYCRIHGIDIFYNNVLLEEHMTTFWAKIPLVRAAMVAHPEAEWIWWMDSDAAITDMDFVIPWERYRDYNLVVHGWDHLVYEKQSWVSLNAGIFLIRNCEWSIEFMERWSVMGPQSPXXXXXXXXXXXXXXDRAFNNSDDQSAIVYLLLKEKDKWADRIFIEHKYYLNGYWIDIVGTYENITEKYEAMEKENPMLNKRHAEKMNRDYAEMREHHMRDNKNFYSDNDDIMVRRRRPFVTHFTGCQPCSGDHNKNYKGENCWKGMERALNFADDQMLKNYGFRHDNL-QSSHVNPIQSFY
O81007______________ISDVVLFLGGAFMSLILVWSFFSFSSISPNLTVKNEES-SNKC-----------SSGIDMSQDPTDPV------YYDDPDLTYTIEKPVKNWDEKRRRWLNLHP---SFIPGAENRTVMVTGSQSAPCKNPIGDHLLLRFFKNKVDYCRIHGHDIFYSNALLHPKMNSYWAKLPAVKAAMIAHPEAEWIWWVDSDALFTDMDFTPPWRRYKEHNLVVHGWPGVIYNDRSWTALNAGVFLIRNCQWSMELIDTWTGMGPVSPEYAKWGQIQRSIFKDKLFPESDDQTALLYLLYKHREVYYPKIYLEGDFYFEGYWLEIVPGLSNVTERYLEMEREDATLRRRHAEKVSERYAAFRE------ERFLKGERGGKGSKRRPFVTHFTGCQPCSGDHNKMYDGDTCWNGMIKAINFADNQVMRKYGFVHSDLGKTSPLQPVPFDY

SNPs (tot: 23)

Position	A %	C %	G %	T %	Probability
424		33		66	0.997452
426	66	33			0.997452
427	66		33		0.997452
440	55		44		1.0
471		55		44	1.0
472			44	55	1.0
480		44	55		1.0
562		85		14	0.993533
568		42		57	1.0
570			50	50	1.0
673		25		75	0.996473
703	75		25		0.996473
879		66		33	0.997452
972	33		66		0.997452
973	33		66		0.997452
1366	85		14		0.993533
1402		85		14	0.993533
1479	25			75	0.996473
1509			14	85	0.993533
1517	16		83		0.994512
1541	66		33		1.0
1550	80			20	0.995493
1551	80	20			0.995493

SSRs (tot: 1)

Start position	End position	Sequence	Length
1411	1423	GAG GAG GAG GAG G	13

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain