SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene9876

Length: 844 nt

Origin of reads: Biogeco_1 Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene9876

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Unassigned protein	-	-	-
FL-Next	tr=Putative uncharacterized protein; Ricinus communis (Castor bean).	-	-	68%
Blast2go	at1g18010 t10f20_2	-	-	71%

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: tr_plants

Fln subject: B9RPE0

Fln msg: your sequence is shorter than subject: 280 - 466

Fln protein: LNYNSTAGSVSDGTYIAFMCFMAFGAFLTLALLPPSKVVRDNGSRPTVIKYSNVNTEAMEILKLFSNWKMLLLIPASWASNFF*PYQFNNVNGKIFTVRTKGFNNLFYWSAQMIGSVAIGFVLDFSFQNRKKRGFLGVAIVAILGTATWGGGLANQLRYTRDKPLQEIDFKDSGSAFAGPFVLYFSYGLLDSMFQTVCYWTIGALAHDSQTLSRYSGFYKGVQSAGAAVAWQSDKHNVSFLGELMVNWVLTTISYPLLIILISFAVNDSNIATVVDPVS*

Protein Length: 281

Fln nts: TATTGAATTATAACAGCACGGCCGGGTCTGTAAGCGATGGAACCTATATAGCCTTCATGTGCTTCATGGCCTTTGGGGCTTTTCTGACGTTGGCTTTGCTTCCACCCAGCAAAGTGGTTAGGGACaATGGTAGCAGGcCTACTGTGATTAAGTACTCTAATGTGAAtACCGAGGCCATGGAGATTCTTAAGCTATTCTCgAACTGGAAGATGCTGCTGCTCaTCCCTGcTtCATGGGCgAGCAACTTCTTTTAacCTTATCAATTCAATAAtGTCAATGGAAAGATCTTCACAgTGAGAACCAaAGGATTCAACAATcTCTTTTACTGGAGCGCACAGATGATAGGGTCTGTGGCAATTGGATTCGTTCTCGATTTCAGCTTCCAGAACAGGAAGAAAAGGGGGTTTCTGGGCGTGGCCATCGTTGCAATACTGGGGACAGCAACCTGGGGAGGAGGGCTCGCAAATCAACTGAGATATACCAGAGATAAGCCCTTACAGGAGATCGATTTCAAAGACTCCGGGTCTGCTTTTGCAGGGCCATTTGTTCTATATTTCAGCTATGGATTACTGGACTCCATGTTCCAGACTGTATGTTATTGGACGATTGGAGCTTTGGCACATGATTCCCAGACTCTGAGCAGATACAGTGGATTCTACAAAGGGGTGCAGAGTGCAGGAGCAGCGGTGGCCTGGCAGAGTGACAAGCACAATGTTTCTTTTCTGGGGGAGCTGATGGTCAACTGGGTTCTTACCACAATCAGCTACCCGCTCTTGATTATTCTTATTTCCTTCGCTGTAAATGATAGTAACATTGCAACTGTTGTTGATCCAGTGTCATAG___CA

Fln Alignment:

sp_v1.1_unigene9876___LNYN-STAGSVSDGTYIAFMCFMAFGAFLTLALLPPSKVVRDNGSRPTVIKYSNVNTEAMEILKLFSNWKMLLLIPASWASNFF*PYQFNNVNGKIFTVRTKGFNNLFYWSAQMIGSVAIGFVLDFSFQNRKKRGFLGVAIVAILGTATWGGGLANQLRYTRDKPLQEIDFKDSGSAFAGPFVLYFSYGLLDSMFQTVCYWTIGALAHDSQTLSRYSGFYKGVQSAGAAVAWQSDKHNVSFLGELMVNWVLTTISYPLLIILISFAVNDSN
B9RPE0______________LNYHRSEAASVNDATYIGFMCFMAAGTLLSLAILPPSQVVRDDGTHCSNIKYSKVSTEATEIVKLFLNWKMLLIVPAAWASNFFYSYQFNNVNGVLFNLRTRGLNNVFYWGAQMLGSVGIGWVLDFSFKSRKMRGFVGIGIVAVLGTAIWGGGLANQLRYSHNNLPPKLDFKDSGSDFGGPFVLYFSYGLLDAMFQSSVYWVIGALADDSEILSRYVGFYKGVQSAGAAIAWQVDTHKVPLLSQLIVNWSLTTVSYPLLIVLVMLAVKDDH

SNPs (tot: 16)

Position	A %	C %	G %	T %	Probability
486	50		50		1.0
489			25	75	0.996473
500	66	33			0.997452
525		33	66		0.997452
550		66		33	0.997452
570	66		33		0.997452
592	33		66		0.997452
594	66	33			0.997452
622		66	33		0.997452
630		66	33		0.997452
648		66		33	0.997452
654	66		33		0.997452
666		33	66		0.997452
702			66	33	0.997452
703		33		66	0.997452
709	33		66		0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain