SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene9873

Length: 1113 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene9873

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	TIR1/AFB auxin receptor protein PintaAFB6 n=1 Tax=Pinus taeda RepID=C9EHT0_PINTA	-	-	89%
FL-Next	tr=TIR1/AFB auxin receptor protein PintaAFB6; Pinus taeda (Loblolly pine).	-	-	98%
Blast2go	auxin signaling f-box 3	-	-	81%

Source	GOs	Term	Type	Identity
Blast2go	response to molecule of bacterial origin	GO:0002237	Biological Process	81%
Blast2go	stamen development	GO:0048443	Biological Process	81%
Blast2go	pollen maturation	GO:0010152	Biological Process	81%
Blast2go	protein binding	GO:0005515	Molecular Function	81%
Blast2go	auxin binding	GO:0010011	Molecular Function	81%

Full-Lengther Next Prediction

SNPs (tot: 32)

Position	A %	C %	G %	T %	Probability
86			85	14	0.993533
88			14	85	0.993533
89			14	85	0.993533
183		11		88	0.923564
356	7	92			0.999532
496		7		88	1.0
501	9		90		1.0
663			80	20	0.995493
701		20	80		0.995493
704		20	80		0.995493
706		80		20	0.995493
710	80			20	0.995493
711		80		20	0.995493
712		80	20		0.995493
713	80		20		0.995493
714	80	20			0.995493
716			20	80	0.995493
718		20	80		0.995493
754		20		80	0.995493
755			20	80	0.995493
758	80		20		0.995493
760			20	80	0.995493
761	20			80	0.995493
763	80	20			0.995493
765	80			20	0.995493
766	80		20		0.995493
767			20	80	0.995493
768	80	20			0.995493
769			80	20	0.995493
775	80	20			0.995493
778	20			80	0.995493
790		20		80	0.995493

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain