SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene9860

Length: 1276 nt

Origin of reads: Biogeco_1 Uagpf Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene9860

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Ubiquitin-activating enzyme E1b, putative n=1 Tax=Ricinus communis RepID=B9RH95_RICCO	-	-	71%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	43%
Blast2go	sumo activating enzyme 2	-	-	82%

Source	GOs	Term	Type	Identity
Blast2go	protein sumoylation	GO:0016925	Biological Process	82%
Blast2go	embryo development ending in seed dormancy	GO:0009793	Biological Process	82%
Blast2go	SUMO activating enzyme activity	GO:0019948	Molecular Function	82%
Blast2go	cytosol	GO:0005829	Cellular Component	82%

Source	InterPros	Term	Type	Identity
Blast2go	UBA/THIF-type NAD/FAD binding fold	IPR000594	-	82%
Blast2go	Molybdenum cofactor biosynthesis, MoeB	IPR009036	-	82%
Blast2go	NAD(P)-binding domain	IPR016040	-	82%
Blast2go	Ubiquitin-activating enzyme	IPR019572	-	82%
Blast2go	Ubiquitin-like 1 activating enzyme, catalytic cysteine domain	IPR023280	-	82%

Full-Lengther Next Prediction

Fln status: Putative N-terminus

Fln database: coniferopsida.fasta

Fln subject: B8LQD0

Fln msg: Distance to subject end: 107 aas, Unexpected STOP codon in 5 prime region, your sequence is shorter than subject: 300 - 448

Fln protein: MASADDFKAIAGAKVLMVGAGGIGCELLKTLALTGFKDVHVIDMDTIEVSNLNRQFLFRKCHVGQSKASVAREAVLKFRPDMKIAAHHANVKDPEFGVDFFKQFNVVLNGLDNLDARRHVNRLCLAAGVPLVESGTTGYLGQVTVHVKGETECYECQPKPAPKTYPVCTITSTPSKFVHCIVWAKELLFAKLFGDRSQANDLNVQSNDAGGSMKDDADAFDIHEDESYEDYGRRIFDHVFGYNIETALRNPETWKKRIAPTPKYIKDILPLKENEENGMSNNSSIEEREQSLSAMASLGL

Protein Length: 301

Fln nts: CGTCGTGACCTTGGCTGTCACTCAGATATACTAGAGCACAACGCAATTGACTTTAGATGGCTTTTGCCTTAAACATTTGATTAAATTAGCCCCTTTATGTTTTCTCTGAGCGAAGTTACAATAATTTTTCCCTCTTTTTCCTGTGTAGGGAAATTTCAGAGACAGCGGAAGAGGATGCATTAAACAAAACCCTCGGCAGTACAGCGACCAAACTTCTCTTTCGTTTCCTAGCGGGATTCCCACGCATCCTTAAACTATTCCCATTTCCAATTCCCCAGCTTCCCCTTTAATTTTCGGGGCGGGCGTCTTCTCCACCACCATGTTCTGAGAGCCCTTTCTTCTCCATTTTAGCTGTTCATAATTTTTTTGAACCTCA_-_ATGGCTTCCGCGGACGATTTCAAAGCGATTGCGGGTGCCAAAGTTTTGATGGTCGGTGCCGGCGGCATTGGATGCGAGCTTCTCAAAACCCTCGCACTTACGGGCTTCAAAGATGTCCACGTTATTGACATGGATACAATTGAAGTTAGCAATTTAAACAGGCAATTTCTATTTCGTAAATGCCACGTTGGGCAATCAAAAGCTAGTGTGGCACGGGAGGCTGTCTTAAAATTCAGACCTGATATGAAGATTGCTGCACACCATGCCAATGTCAAGGATCCGGAGTTTGGTGTAGATTTTTTTAAGCAGTTTAATGTTGTATTAAATGGGTTGGACAATCTGGATGCTCGCAGACATGTGAACAGGCTTTGCTTGGCTGCAGGAGTTCCTCTGGTAGAAAGTGGAACTACTGGGTATTTAGGACAGGTAACTGTGCATGTTAAGGGTGAGACAGAGTGTTACGAGTGCCAACCAAAGCCAGCACCAAAAACATATCCAGTTTGTACAATCACAAGTACTCCATCAAAGTTTGTACATTGCATTGTCTGGGCAAAAGAACTACTTTTTGCAAAGTTGTTTGGGGATAGGAGCCAGGCAAATGATCTTAATGTACAGTCTAATGACGCGGGAGGATCCATGAAGGATGATGCTGATGCGTTTGACATTCATGAGGATGAAAGTTATGAAGACTATGGCAGGCGAATATTTGACCATGTTTTTGGATATAATATAGAGACGGCTCTGAGAAATCCAGAAACATGGAAGAAGAGGATAGCACCAACTCCTAAATACATTAAAGATATTCTTCCACTGAAGGAGAATGAAGAGAATGGAATGTCTAATAATTCAAGTATAGAGGAGAGGGAACAGTCCTTATCTGCAATGGCTTCCCTGGGACTG

Fln Alignment:

sp_v1.1_unigene9860___KVLMVGAGGIGCELLKTLALTGFKDVHVIDMDTIEVSNLNRQFLFRKCHVGQSKASVAREAVLKFRPDMKIAAHHANVKDPEFGVDFFKQFNVVLNGLDNLDARRHVNRLCLA-------------AGVPLVESGTTGYLGQVTVHVKGETECYECQP--KPAPKTYPVCTITSTPSKFVHCIVWA
B8LQD0______________KVLVVGAGGLGCELLKDLALSGFKKLEVIDMDTIEVSNLNRQFLFRMQDVGQPKAVVAARRVMERVSGVNIVPHFCRIEDKD--SEFYRVFDIIALGLDSIEARSYINAVVCSFLEYDSDDKPLEETIKPMVDGGTEGFKGHARVILPGMTACFECTVWLFPPQVKFPLCTLAETPRTAAHCIEYA

SNPs (tot: 44)

Position	A %	C %	G %	T %	Probability
31		66	33		0.997452
110		16	83		0.994512
112			83	16	0.994512
113	83			16	0.994512
114	83		16		0.994512
117			16	83	0.994512
118	83			16	0.994512
121	83	16			0.994512
196	14		85		0.993533
197		87		12	0.992554
198	87		12		0.992554
200			12	87	0.992554
294		33		66	1.0
340		33		66	1.0
499	16			83	0.994512
501	83		16		0.994512
502			16	83	0.994512
503			16	83	0.994512
538		16	83		0.994512
540		83		16	0.994512
541	83	16			0.994512
542	83		16		0.994512
544			16	83	0.994512
545	16			83	0.994512
547		16		83	0.994512
548	83			16	0.994512
550			16	83	0.994512
551			16	83	0.994512
555	83	16			0.994512
557	83	16			0.994512
561	16	83			0.994512
629		20		80	0.995493
635	60		40		1.0
773	80		20		0.995493
789	14		85		0.993533
839		85		14	0.993533
889		87	12		0.992554
890	87		12		0.992554
891	87		12		0.992554
904	85		14		0.993533
999		14		85	0.993533
1016		28		71	1.0
1017	14		85		0.993533
1049	83			16	0.994512

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain