SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene9839

Length: 1227 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene9839

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	ATPP2-A13, putative n=1 Tax=Ricinus communis RepID=B9SRL8_RICCO	-	-	57%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	96%
Blast2go	f-box family protein	-	-	70%

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: A9NS34

Fln msg:

Fln protein: YPGLADIPESCVARIFEHLGPIDICKLAGLNWAFKGASSCDYVWEQKLPICYQEMLSKLFISEPHFLSKKQIYALLCHPISFDDATKEVWLDRATGGVCFSISARAMAITGIDDHRYWRWIPYDESRFHEAAYLQQHWWFEVDGVVKFQLPAGEYSLSFRLRLGRPSRRLGRRIYVFDQIHGWDLKPVRFSLSTSDGQHAIRECYLEEPGEIEGNGIVSYARGNWTDYYVGNFEVKNDSKVTEVKFSMTQIDCTHSKGGLCLDLVSIIPSKLRKETVKDL*

Protein Length: 282

Fln nts: TATCCAGGGTTGGCTGATATACCAGAGAGTTGCGTTGCGAGGATTTTCGAGCACTTGGGTCCGATTGACATATGCAAGCTTGCTGGTCTAAATTGGGCCTTCAAGGGCGCGTCTTCTTGTGATTATGTGTGGGAGCAGAAATTGCCTATATGTTACCAGGAGATGCTTTCCAAACTGTTCATCTCAGAGCCCCATTTTCTCTCCAAGAAGCAGATATACGCTCTTCTTTGTCACCCAATTTCATTCGACGATGCCACCAAGGAGGTTTGGCTGGATAGGGCTACAGGAGGAGTCTGCTTTTCAATTTCTGCAAGAGCAATGGCCATCACTGGAATAGATGATCATCGTTACTGGAGATGGATTCCGTATGATGAGTCCAGGTTCCATGAAGCAGCATATCTTCAGCAACATTGGTGGTTTGAAGTAGATGGTGTTGTGAAATTTCAGCTTCCTGCAGGAGAATACAGTCTTTCTTTCAGGTTACGACTTGGAAGGCCTTCTAGAAGATTGGGTCGTCGGATTTATGTCTTTGATCAAATTCATGGATGGGACTTGAAACCTGTTCGGTTCTCTCTTTCTACATCTGATGGTCAGCATGCTATACGAGAGTGCTATTTGGAAGAGCCTGGTGAAATTGAAGGTAATGGCATTGTGAGTTATGCTCGTGGAAACTGGACTGACTATTATGTTGGCAACTTTGAGGTTAAGAACGATAGCAAAGTGACAGAAGTCAAGTTCTCCATGACACAAATTGATTGCACACATTCCAAAGGCGGTCTTTGCTTAGACCTCGTTTCAATTATTCCTAGCAAGCTTCGGAAGGAAACAGTTAAGGATTTGTAA___ATATTAGGTTCCCCCTCTCCACCCCCCCTAGAAGGATTGGGCAGTTTAAAAATACAGTAATATTGACATGCAGTTTCCATTTAGGATCTGAAAATTCTATACTGTGAGTCATTGCTACTGTTTGTGTGCAGATATGAAAGCTGATTGCATACAATAGAGTTAGTAAAATAAGGAAGAAATATTACGAGGATCTGCACTTGATGTATTTGCTGATTAAATGGCATGAATTTATGTAATACTGCTCTCAGGCCCTTGTACAAAAGTATTTTTACATTTCACTGTGAAAATATTGTCTTGTGTATGTGCAGTGCATTCTACAATTGTCATACCTGGACTAAATTTAGATGTACGGATGGCATTCTATTTTGGAAGGTTTAAATAACC

Fln Alignment:

sp_v1.1_unigene9839___YPGLADIPESCVARIFEHLGPIDICKLAGLNWAFKGASSCDYVWEQKLPICYQEMLSKLFISEPHFLSKKQIYALLCHPISFDDATKEVWLDRATGGVCFSISARAMAITGIDDHRYWRWIPYDESRFHEAAYLQQHWWFEVDGVVKFQLPAGEYXXXXXXXXXXXXXXXXXXIYVFDQIHGWDLKPVRFSLSTSDGQHAIRECYLEEPGEIEGNGIVSYARGNWTDYYVGNFEVKNDSKVTEVKFSMTQIDCTHSKGGLCLDLVSIIPSKLRKETVKDL
A9NS34______________YPGLADIPESCVARIFQHLGPVDICKLAGLNWAFKGASSCDYVWEQKLPICYQEMLSKLFISEPHFLSKKQIYAHLCHPISFDDATKEVWLDRATGGVCLSISARAMAITGIDDHRYWRWIPYDESRFHEAAYLQQHWWFEVDGVVKFQLPAGEYSLSFRLRLGRPSRRLGRRIYVFDHIHGWDLKPVRFSLSTSDGQHAIRECYLEEPGEIEGNGIVSDARGKWTDYYVGEFEVKNESKVTEVKFSMTQIDCTHSKGGLCLDLVSIVPSKLRKETMKDL

SNPs (tot: 14)

Position	A %	C %	G %	T %	Probability
6	85			14	0.993533
7	14		85		0.993533
58	85		14		0.993533
85		28		71	1.0
876		71		14	0.984337
1127	16	83			0.994512
1130		16		83	0.994512
1145		25	75		0.996473
1148		20		80	0.995493
1150	20			80	0.995493
1151	20		80		0.995493
1152	20			80	0.995493
1153	20		80		0.995493
1154	20	80			0.995493

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain