SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene9837

Length: 1888 nt

Origin of reads: Biogeco_1 Uagpf Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene9837

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	GTP-binding protein engB, putative; K03978 GTP-binding protein	-	-	69%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	92%
Blast2go	gtp-binding protein	-	-	81%

Source	InterPros	Term	Type	e value	Identity
Blast2go	GTP-binding domain, HSR1-related	IPR002917	-	0.0	81%
Blast2go	GTP-binding protein, ribosome biogenesis, YsxC	IPR019987	-	0.0	81%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: D5A994

Fln msg:

Fln protein: MHIHFLRHSSMCQLVFQLQQHIVSPLLHSKQSLTSLHLPHTIINRTFGGPPGPYRVTLDVSRRVTQGSPVLVPLKYEEEQEAEAAAESSSSETPIPLDRLFIPPGVDASQLKTAKRLEGSNIVISPYAYDADIEQAEFIKSSSRVEECPMDGYPEFALVGRSNVGKSSLVNSLVRRKQLAMTSKKPGKTQLINHFLINNSWYLVDLPGYGYAIAPQAVRTEWNAFTKDYFLNRKTLVCVLLLIDASIPAKKIDIECATWLGQNQIPMAFVFTKCDKRKKKKNGNKRPEENIYDFQNLIREFYKETPPWIMTSSVTNQGRDELLLHIAQLKNYWLTH*

Protein Length: 338

Fln nts: ATATATCCAAATATTGTTATGAAATTAGTATCGATACCCCGTTCATTCCACGAAAACCCAATTTCATTACAAAATTCAGACCAACTTCGTGAGTACACCCAATGCGCTTGTAGTTGTCTATGAAATATTGATGCCATACATATTTCATTCCACATGCTCTCTGTTTTCCGATTCCACACTGGCATTCCTTGTACAAACATTCCATTGAAATTAAAATACCACTTTCATGTGGCCCTGCGTTATCGCTGAAACTCTATGACGGACTTATCCCGACTTCGATTGCCCTCAGTCACGTAACCCGTCCCAACAAGCGACTTTGAAGA_-_ATGCACATACACTTTCTAAGGCATTCCAGTATGTGCCAACTAGTTTTCCAGCTGCAGCAGCACATTGTAAGCCCACTTCTGCATTCGAAGCAGTCCCTAACGTCTCTCCATCTGCCTCACACCATAATAAACAGGACATTCGGAGGCCCACCTGGGCCTTACAGAGTCACCCTTGATGTTTCCAGAAGGGTCACTCAGGGCTCTCCTGTGTTAGTCCCACTCAAATATGAAGAAGAACAAGAAGCCGAAGCAGCAGCAGAATCCTCCTCCTCTGAGACGCCTATTCCCCTCGACAGGCTCTTCATTCCACCAGGAGTGGATGCATCACAGCTCAAGACAGCCAAGAGGTTAGAGGGCTCAAATATAGTGATTAGCCCATATGCTTATGATGCTGACATTGAACAAGCAGAGTTCATAAAGAGCAGCAGCAGAGTGGAAGAGTGCCCCATGGATGGCTATCCTGAGTTCGCTCTTGTGGGTCGTTCCAATGTAGGGAAATCTTCTCTTGTCAATTCGTTGGTCAGGAGGAAACAACTCGCAATGACATCCAAGAAACCAGGGAAGACCCAACTTATAAACCATTTCTTGATAAACAACAGCTGGTACTTGGTGGACTTGCCTGGATATGGGTATGCAATTGCCCCTCAAGCAGTCCGGACTGAATGGAATGCATTTACAAAAGATTACTTTCTGAACAGAAAAACTCTAGTGTGTGTGTTGCTGCTTATCGATGCAAGCATACCTGCAAAAAAAATAGATATTGAGTGTGCTACTTGGCTTGGGCAAAATCAGATTCCAATGGCTTTCGTTTTCACAAAATGTGATAAAAGGAAGAAGAAAAAAAATGGTAATAAGCGGCCCGAAGAAAACATTTATGATTTTCAAAACCTGATTAGAGAGTTCTACAAGGAAACCCCTCCCTGGATAATGACAAGCAGTGTAACCAACCAAGGGAGAGATGAACTTTTGCTACATATTGCACAGCTGAAAAACTACTGGCTAACACATTAG___GAAATTACCCATTTTACATCTTGGAACATGTAGGAGTATAAGAAATCAACGGTGCCCAAGTGTATGATATAAAGGTGGCACTACAGAAATTGGGTTTATGAAAGTGGCGTCATTTTATGGAGTTACCTATCAGTTTATGCTGCGATTTGTTTGATATCATGTATTACTGATTGCGATGATTCTTATTTGTCTTAGATCAGCCTATTTCAAGAAAATTATGCGAGTATATTGAGTTAATGATTTGTGACATAACTGGATCTTTTGTTTTGTGTAAGAATCCTTCTTGATAAATGTCAGACCGTTTGGTCAATTAAACACTTGTACAAGAGTAAAATCTCTGTAGAATGACACTCAGTTGTTAAGAATGGATCTTCTCTCTTCAGTACTTGCAAGAAAAGCAAAAGTATTTGAAGGCAGACAAATTATTTTGCACAGATGGTACTTGAAAATAGTTGAGTTGAAGAAAAATGAAAGAACAAGAAGAATCGGAAATCCTGCATTATTCCGTTCCATCTCTTCAAAATATATATTTGAAAATAGCATAGCTTCCAGGA

Fln Alignment:

sp_v1.1_unigene9837___HFLRHSSMCQLVFQLQQHIVSPLLHSKQSLTSLHLPHTIINRTFGGPPGPYRVTLDVSRRVTQGSPVLVPLKYXXXXXXXXXXXXXXXXTPIPLDRLFIPPGVDASQLKTAKRLEGSNIVISPYAYDADIEQAEFIKSSSRVEECPMDGYPEFALVGRSNVGKSSLVNSLVRRKQLAMTSKKPGKTQLINHFLINNSWYLVDLPGYGYAIAPQAVRTEWNAFTKDYFLNRKTLVCVLLLIDASIPAKKIDIECATWLGQNQIPMAFVFTKCDXXXXXXXXXXXPEENIYDFQNLIREFYKETPPWIMTSSVTNQGRDELLLHIAQLKNYWLTH
D5A994______________HFLRHPNMSQLVFHLHHHIVSPLLHSKHSPTSLYLPHIIINRTFGGPPGPYRVTLDVSRRVTQGSPVLVPLKYEEEQETEVAAESSSEM-PIPLDRLFIPPGVEASQLNTAKRLEGSNIVISPYAYDAQIEQAEFIKSSSRVEECPMNGYPEFALVGRSNVGKSSLVNSLVRRKQLAMTSKKPGKTQLINHFLINNSWYLVDLPGYGYAIAPRAVRTEWNAFTKDYFLNRKALVCVLLLIDASIPAKEIDIECATWLGQNQIPMAFVFTKCDKRKKRKNGNKRPEENIYDFQNLIREFYQETPPWIMTSSVTNQGRDELLLHIAQLKNYWLTH

SNPs (tot: 33)

Position	A %	C %	G %	T %	Probability
251	25		75		0.996473
271		66	33		0.997452
311	66		33		0.997452
319	16			83	0.994512
322	83		16		0.994512
323	83		16		0.994512
455	83			16	0.994512
456	83		16		0.994512
457		83	16		0.994512
458	83		16		0.994512
667		50	50		1.0
1262	80			20	0.995493
1264		80	20		0.995493
1265	80		20		0.995493
1424	85		14		0.993533
1442	90			10	0.90298
1444			10	90	0.90298
1480		14		85	0.993533
1547		60		40	1.0
1575	75			25	0.996473
1576	75	25			0.996473
1577			25	75	0.996473
1578		25	75		0.996473
1580		20	20	60	0.99255
1581			20	80	0.995493
1582			20	80	0.995493
1583	25	25			0.995533
1589	80	20			0.995493
1590			20	80	0.995493
1591	60		20	20	0.99255
1592	60	20	20		0.99255
1597			75	25	0.996473
1603	33			66	0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain