SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene9833

Length: 1958 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

>sp_v1.1_unigene9833
CGTCGTGACCTTGGCTGCCAATAAGGTTTGTGAGATGGACTTGATTCCTCAGGATGTGATCCCTGATCTGCATAGGATTGCAGAAAGGATGGTGGCGGCAGGATATACAAGAGAGTGTATGCAGGTCTATGGAAGTATCAGAAAATCCATGGTGGACGAGAGTTTCCTTCGACTAGGAATTGAGAAGCTCAGTATTGGAGACGTGCAGAGATTGGAGTGGGAAACACTAGAAGTCAAGATTAAGAAATGGATCAGGGCTGCCAAAGTGTGTATCAGGATGCTTTTTGCAAGCGAAAAGCGTCTGTGTGAGCAGGTCTTTGATGGGTTGGATTCTGTTGGGGAAACTTGCTTTTCTGAGCTTGCCAAGGGTGCAACAATGCAGTTGTTCAATTTCAGTGAAGCCATAGCCATTAGTAGGAGGTCTCCTGAGAAGTTGTTCAAGATCCTTGATCTGTATGAAACTCTTTCGGAGCTTTTGCCTGATATTGAGATGGTGTTTTCCGATGAGCTGTGCGCAAATGTGAAGACACAGGCCTCGGAAATATTGACGCGGCTTGGAGAAGCGGCCAGAGGGATCTTCACAGAGTTTGAGAATGCAATTCAAAGGGAGACTTCCAGAACACCTATCCCTGGAGGTACAATTCATCCTATAACTAGGTATGTAATGAATTACATTAGTTTTATTTCGGATTACAAAGAGACATTAATGAAGCTCGTTGTCAACAAGCCTTCTCAGACCTCAAAGCTTCTGCCTGAAGGGTTAATAGATTTGATTGGGGAGTATGATAAAGGAAGTGATTCAGATGATCAATCTGTGTTGTCTCGGCATGACCTTGGCAGCAACCCAATTCTGCAAAACAATTTAGAGGGTAAGTCCAAGGTGTACAAGGATATTTCTTTATCACATATTTTTCTTATGAACAATGTGCACTATATTGTTCAGAAGGTGAAGGGCTCAGATCTTAGAGCTCTAATTGGAGATGACTGGCTGAGAAAGCACTCAGGTAAGGTCAGACAATATGCAACAAACTACCAAAGAGCTACTTGGATGAAAGTACTGTCTTGTTTAAGAGATGAAGGTCTTCATGTGGGTGGAAGTTTTTCTAGTGGGGTCTCTAAAACTGCCCTGAAGGAGAGGTTCAAAAGCTTCAATGCTGCATTCGAGGAAGTGCATAGGTCTCAGTCTACTTGGATTGTTCCTGATGCACAGCTGCGAGAGGAACTCCGAATATCCATAGCAGAGAAGTTGTTACCAGCATATAGGTCTTTCTTTGGCCGATTTAAGAACCATTTGGAAAGTGGGAGGCACTCTGAAATGTATATCAAATACTCACCAGAAGACTTGGAAAATACCCTTTTAGATTTCTTCGAGGGCTCTCCTGTGTCTATGCATGTAAGGAGGAGATCCAATTGACAGCTTCTAGAACCTACTTCCTTCTGAGATTATTAGCCTCTAATATCTATCCTTCTCTGTAAACCAACAGATATAGCTTTCTAGGGTTTCTTTTCATCTCCCCCTGTAATGGCAGTAGAAGATTGGACCAAGCTAAGATGCCTATTGAGCTTATACCCAAAGCACTTCATTCTTTTGCACTGTTGAAGGTCCTTGTGCCTTGTAAGCTTTTGAGGGTACCGAAGTAGCTTACTTACTGGTTGAATTCTGTCTGACTCATCTCCAGATTCTTGCCCTGTTAAAATGGGTTCAATTTGGTTGATTGAAGCAGCATTCTTCAAAGCGAAGGGAAGAGACCGCGAGGGGCATCCAGTGATCAGCATCGTTCTTCATTTTTGTAGCTTGTCATTCAACTTATTATTTGTATTCTGTACAAGGTCTAATAATCAGCATTAGGAAAATGCATTTCCTAGGATGCATTTGCCCCACACAGTACTTGTGCGGGGCAAATTTTTCGTTATGTAATGTTTGCTATATTTCAAGAATTTGATATCAAACTTTTCTT

Ace file of the UniGene sp_v1.1_unigene9833

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	protein binding protein, putative	-	-	64%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	51%
Blast2go	leucine zipper-containing protein	-	-	77%

Source	GOs	Term	Type	e value	Identity
Blast2go	nucleus	GO:0005634	Cellular Component	0.0	77%
Blast2go	cytosol	GO:0005829	Cellular Component	0.0	77%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Exo70 exocyst complex subunit	IPR004140	-	0.0	77%
Blast2go	Cullin repeat-like-containing domain	IPR016159	-	0.0	77%

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: A9NUF7

Fln msg: your sequence is shorter than subject: 471 - 627

Fln protein: VVTLAANKVCEMDLIPQDVIPDLHRIAERMVAAGYTRECMQVYGSIRKSMVDESFLRLGIEKLSIGDVQRLEWETLEVKIKKWIRAAKVCIRMLFASEKRLCEQVFDGLDSVGETCFSELAKGATMQLFNFSEAIAISRRSPEKLFKILDLYETLSELLPDIEMVFSDELCANVKTQASEILTRLGEAARGIFTEFENAIQRETSRTPIPGGTIHPITRYVMNYISFISDYKETLMKLVVNKPSQTSKLLPEGLIDLIGEYDKGSDSDDQSVLSRHDLGSNPILQNNLEGKSKVYKDISLSHIFLMNNVHYIVQKVKGSDLRALIGDDWLRKHSGKVRQYATNYQRATWMKVLSCLRDEGLHVGGSFSSGVSKTALKERFKSFNAAFEEVHRSQSTWIVPDAQLREELRISIAEKLLPAYRSFFGRFKNHLESGRHSEMYIKYSPEDLENTLLDFFEGSPVSMHVRRRSN*

Protein Length: 472

Fln nts: CGTCGTGACCTTGGCTGCCAATAAGGTTTGTGAGATGGACTTGATTCCTCAGGATGTGATCCCTGATCTGCATAGGATTGCAGAAAGGATGGTGGCGGCAGGATATACAAGAGAGTGTATGCAGGTCTATGGAAGTATCAGAAAATCCATGGTGGACGAGAGTTTCCTTCGACTAGGAATTGAGAAGCTCAGTATTGGAGACGTGCAGAGATTGGAGTGGGAAACACTAGAAGTCAAGATTAAGAAATGGATCAGGGCTGCCAAAGTGTGTATCAGGATGCTTTTTGCAAGCGAAAAGCGTCTGTGTGAGCAGGTCTTTGATGGGTTGGATTCTGTTGGGGAAACTTGCTTTTCTGAGCTTGCCAAGGGTGCAACAATGCAGTTGTTCAATTTCAGTGAAGCCATAGCCATTAGTAGGAGGTCTCCTGAGAAGTTGTTCAAGATCCTTGATCTGTATGAAACTCTTTCGGAGCTTTTGCCTGATATTGAGATGGTGTTTTCCGATGAGCTGTGCGCAAATGTGAAGACACAGGCCTCGGAAATATTGACGCGGCTTGGAGAAGCGGCCAGAGGGATCTTCACAGAGTTTGAGAATGCAATTCAAAGGGAGACTTCCAGAACACCTATCCCTGGAGGTACAATTCATCCTATAACTAGGTATGTAATGAATTACATTAGTTTTATTTCGGATTACAAAGAGACATTAATGAAGCTCGTTGTCAACAAGCCTTCTCAGACCTCAAAGCTTCTGCCTGAAGGGTTAATAGATTTGATTGGGGAGTATGATAAAGGAAGTGATTCAGATGATCAATCTGTGTTGTCTCGGCATGACCTTGGCAGCAACCCAATTCTGCAAAACAATTTAGAGGGTAAGTCCAAGGTGTACAAGGATATTTCTTTATCACATATTTTTCTTATGAACAATGTGCACTATATTGTTCAGAAGGTGAAGGGCTCAGATCTTAGAGCTCTAATTGGAGATGACTGGCTGAGAAAGCACTCAGGTAAGGTCAGACAATATGCAACAAACTACCAAAGAGCTACTTGGATGAAAGTACTGTCTTGTTTAAGAGATGAAGGTCTTCATGTGGGTGGAAGTTTTTCTAGTGGGGTCTCTAAAACTGCCCTGAAGGAGAGGTTCAAAAGCTTCAATGCTGCATTCGAGGAAGTGCATAGGTCTCAGTCTACTTGGATTGTTCCTGATGCACAGCTGCGAGAGGAACTCCGAATATCCATAGCAGAGAAGTTGTTACCAGCATATAGGTCTTTCTTTGGCCGATTTAAGAACCATTTGGAAAGTGGGAGGCACTCTGAAATGTATATCAAATACTCACCAGAAGACTTGGAAAATACCCTTTTAGATTTCTTCGAGGGCTCTCCTGTGTCTATGCATGTAAGGAGGAGATCCAATTGA___CAGCTTCTAGAACCTACTTCCTTCTGAGATTATTAGCCTCTAATATCTATCCTTCTCTGTAAACCAACAGATATAGCTTTCTAGGGTTTCTTTTCATCTCCCCCTGTAATGGCAGTAGAAGATTGGACCAAGCTAAGATGCCTATTGAGCTTATACCCAAAGCACTTCATTCTTTTGCACTGTTGAAGGTCCTTGTGCCTTGTAAGCTTTTGAGGGTACCGAAGTAGCTTACTTACTGGTTGAATTCTGTCTGACTCATCTCCAGATTCTTGCCCTGTTAAAATGGGTTCAATTTGGTTGATTGAAGCAGCATTCTTCAAAGCGAAGGGAAGAGACCGCGAGGGGCATCCAGTGATCAGCATCGTTCTTCATTTTTGTAGCTTGTCATTCAACTTATTATTTGTATTCTGTACAAGGTCTAATAATCAGCATTAGGAAAATGCATTTCCTAGGATGCATTTGCCCCACACAGTACTTGTGCGGGGCAAATTTTTCGTTATGTAATGTTTGCTATATTTCAAGAATTTGATATCAAACTTTTCTT

Fln Alignment:

sp_v1.1_unigene9833___LAANKVCEMDLIPQDVIPDLHRIAERMVAAGYTRECMQVYGSIRKSMVDESFLRLGIEKLSIGDVQRLEWETLEVKIKKWIRAAKVCIRMLFASEKRLCEQVFDGLDSVGETCFSELAKGATMQLFNFSEAIAISRRSPEKLFKILDLYETLSELLPDIEMVFSDELCANVKTQASEILTRLGEAARGIFTEFENAIQRETSRTPIPGGTIHPITRYVMNYISFISDYKETLMKLVVNKPSQTSKLLPEGLIDLIGEYDKGSDSDDQSVLSRHDLGSNPILQNNLEGKSKVYKDISLSHIFLMNNVHYIVQKVKGSDLRALIGDDWLRKHSGKVRQYATNYQRATWMKVLSCLRDEGLHVGGSFSSGVSKTALKERFKSFNAAFEEVHRSQSTWIVPDAQLREELRISIAEKLLPAYRSFFGRFKNHLESGRHSEMYIKYSPEDLENTLLDFFEGS
A9NUF7______________LNANEICEIDMMPLDAVQDLRSIAKRMVAGGYGSECVRIYGMTRKSVIEGCLNRIGVDWLSASDVQKMEWEILDFKIKNWIRSVRIAVRILFASEKQLCNEIFAGLDHVRDSCFAEVIMRPTMKVLAFGESVTVSKKSSERLFRVLDMYETLSDLMPDIDAVYCQESCASVRTLASTIFVQLGDSALGIMVVFENAIKAENSKTSVPGGTIDPLTGYVMKYLSFLSDYKETLTNMMANTP-------------IDGHDELGSQVSALSVRLGWTITN---LQCNLDLKSNLYKDVALSNLFLMNNLHYIVKKVKGSKLLGLLGYGWLRKNQGEVRQYAENYERAAWMQALNCLSDERIHVNEGISSGVSQQALKDRLKGFNCAIEEVLKKHSGWMVPDVQLREELSISVAEKMIPAYRSFLGRLRKYSESGRHSQINIKYTAEDLEARLLDLFHGN

SNPs (tot: 37)

Position	A %	C %	G %	T %	Probability
299	33		66		0.997452
321	33		66		0.997452
871	33		66		0.997452
877	25			75	0.996473
878		75		25	0.996473
879		75	25		0.996473
880	75		25		0.996473
881	75		25		0.996473
979		25	75		0.996473
981	75			25	0.996473
982		25	75		0.996473
983	75		25		0.996473
994	75			25	0.996473
995		25	75		0.996473
997	75	25			0.996473
998	75			25	0.996473
999		25	75		0.996473
1000	25	75			0.996473
1375	85			14	0.993533
1376		14	85		0.993533
1377	16		83		0.994512
1433		14		85	0.993533
1485	88		11		0.923564
1486	88			11	0.923564
1488	88			11	0.923564
1491		11		88	0.923564
1492	88			11	0.923564
1497			10	90	0.90298
1498			10	90	0.90298
1499			10	90	0.90298
1503			90	10	0.90298
1504		10	90		0.90298
1507			10	90	0.90298
1510	11			88	0.923564
1511		11		88	0.923564
1513		11		88	0.923564
1514	11	88			0.923564

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain