SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene9809

Length: 1518 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene9809

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	PRA1.H; PRA1.H (PRENYLATED RAB ACCEPTOR 1.H)	-	-	3.0e-36	36%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	91%
Blast2go	protein	-	-	0.0	60%

Source	GOs	Term	Type	e value	Identity
Blast2go	vesicle-mediated transport	GO:0016192	Biological Process	0.0	60%
Blast2go	endoplasmic reticulum	GO:0005783	Cellular Component	0.0	60%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9P0H1

Fln msg:

Fln protein: MAFSANPLSLSLPQRAFETWLRDSGYLEIIDDCAIDESAKAAGGSSKLSSLLTINPFAKLTTEDLSRDAVSWTGEFFDSGLGPAHSYSWPSSITQMKLRMEENLKRYTRNYIYLSLLILVCFLYKMPVALLSLISILAFWDMLRVCSNKWGLENYPAIHQTLVLIAKLVTAIIMFYCKVALALCWAGIFSFTVLIVHSSLRKINNPKKPVHKEKHHKLQLRRK*

Protein Length: 225

Fln nts: ATGGGGATAGAAATCGTCGTGACCTTGGCTGTCACTCATTTTTTCTGGATCATTTTCGACCTATTTTTGAAACTCCAAGCCCAAAGTCTAATTCAATGGCAAACTGATAAGCGGAGGCTCTCCTGTACCGCTGTGTAGAGCCTGAGCCGAGGAATGGCGGAAGAATGGTAAATTTCCGTTCACAATGTGAAAAGAATA_-_ATGGCGTTTTCTGCGAACCCTCTATCGCTAAGCCTTCCACAACGTGCTTTCGAAACATGGCTCAGAGACAGCGGGTACCTCGAAATTATAGACGATTGTGCGATCGACGAGTCTGCGAAAGCAGCAGGAGGAAGTAGTAAATTGTCGTCATTGCTCACGATAAATCCTTTCGCCAAATTGACGACGGAGGACCTCTCCAGAGATGCAGTCTCTTGGACTGGGGAGTTCTTCGACTCTGGACTCGGCCCTGCGCACTCTTATTCATGGCCATCCTCTATTACACAGATGAAGCTGCGAATGGAGGAGAACTTGAAGAGATATACGCGAAATTATATTTATCTTTCACTCTTAATTCTGGTCTGCTTTTTGTACAAAATGCCTGTGGCCTTGCTAAGTTTGATTTCAATATTAGCATTTTGGGACATGCTAAGGGTATGTAGCAATAAGTGGGGACTTGAGAACTATCCCGCAATTCATCAGACATTAGTTCTCATTGCAAAACTTGTGACGGCAATCATAATGTTCTATTGTAAAGTAGCACTAGCTCTTTGCTGGGCGGGAATCTTTAGTTTTACAGTTTTGATCGTCCACAGCTCATTGAGAAAGATAAACAACCCAAAGAAACCTGTACACAAAGAAAAGCATCATAAGTTGCAGCTGAGGAGGAAATAA___GGATGTCTGGTTTTATTTTATAAAAGATATTTGGCCTCTTAGCTTATTTTGTTATTCTGTTAGAAGTTGAGAACATATGAATGGTGACTGAAGTAGTACGAGTGTTGAGAAGAGTCCATGCGTTTCGCGCACATTCCACACTAAAGAAGCGAAAGTTAAGCCGATACAGAATTATTACGCATTTTCAGTTTACATCAATAGGATTGGCATGGTAGGAGAACATTCTATACTGGTTTTTTTGATGGGGACTTTAATCCAGCAGTGGCTGGAATGCCTTTGGCTTGGATCAGAAGCAATTGAAAAATTTGTGTAAATTGATCCTCGCTCCACTCTCAGAGCTCTCCACATTAACGTGAAACTAGGCCACAAATGTAAGCCTCCTAGAAAAAACTGGTTAAAATTATTTTATGCTACATTGCATCCATAATAATAACCAAGGCCACAAATGTAGGCCGCCTAGAAAAAGTTGGTTAAACTGAGTTTATGCTATATTGCGCCTATAATAATaGATGATcAtTATTgTGCTATATTGCGCCTATAATAATGGATGATAAATATTGTTTGGATGGTTCTAATGGATATTGTTATAAGTTATTTGGTTCAATAAAATAATGATCAATGGGGCCTCGGGAGGTTTTCATGTTATAT

Fln Alignment:

sp_v1.1_unigene9809___MAFSANPLSLSLPQRAFETWLRDSGYLEIIDDCAIDEXXXXXXXXXXXXXXXTINPFAKLTTEDLSRDAVSWTGEFFDSGLGPAHSYSWPSSITQMKLRMEENLKRYTRNYIYLSLLILVCFLYKMPVALLSLISILAFWDMLRVCSNKWGLENYPAIHQTLVLIAKLVTAIIMFYCKVALALCWAGIFSFTVLIVHSSLRKINNXXXXXXXXXXXXLQLRRK
A9P0H1______________MAFSANPLSLSLPQRAFETWLRDSGYLEIIDECAIDDSVEVVGGSNKWSSLLTINPFAKLTTEDLSRDAVPWTGEFFDSGLGPAHSYSWPSSITQMKLRMEENLKRYTRNYIYLSLLILACFLYKMPVALLSLISILAFWDMLRICSNKWGLENYPLLHQMLILIAKLVTAIIMFYCKVALALCWAGIFSFTVLIVHSSLRKITNPKKPLHKEKHHKLETRRK

SNPs (tot: 17)

Position	A %	C %	G %	T %	Probability
15		66		33	0.997452
21		33	66		0.997452
22	66	33			0.997452
23		66	33		0.997452
27		33	66		0.997452
31			66	33	0.997452
38	33	66			0.997452
216	75			25	0.996473
778		11		88	0.923564
1020	10		90		0.90298
1021		90		10	0.90298
1022			90	10	0.90298
1203		83		16	0.994512
1204			16	83	0.994512
1205		83	16		0.994512
1206		33	16	50	1.0
1342	33		66		0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain