SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene9795

Length: 1999 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

>sp_v1.1_unigene9795
CGTCGTGACCTTGGCTGTCAGTGGAGTTAACGCTGAGCCTCAGCAATTCTCGAAGCCGTTCTTGAGCCCCGAAAGCCAAAGCCCAAGCAAGATTCCAAGCCCAAAGTCTTTTGTTTATTTCAAAGTCTGAGAATGAAGGTCCGGTATGGATCCTGTATCGTATTATTGTTCTTTATCAGTTGTGTTTACTCTGCAGACGAAGATGTCGAAATGGATGGAAAGTGCGTGGAAGCAGATCTGGCGGCCCTGGTGAGCTTTAAATTTCACATCGTCGAAGACAAATCCGAGATCTTTAATTCATGGAGCGGTAACCATTGCTGCGCTGGCTGGGAAGGCGTAGAATGCGATTTCCAGAACGGGCGCGTCGTGAAGCTGGAGTTACAGAACCACGAATCGAGTAACGACACTATGTACATGCGCGGAACTCTGTCTCCTTCCCTGGGAAACCTCGCTTTCCTCCAAGTCCTGGTAATCAATGGATTCAAGGAGATCAAGGGATCGATTCCCGCCACGATCGGAAATCTTTCACATCTCAGGCAGCTTTATCTCGAGAACAATAAGCTCTCCGGCCTAATTCCTCCGTCCATCGGAAAATTATCGCTGCTCGAGACGCTTTCCCTCAACGGCAACCGTCTCAGCGGCCGAATTCCCGATTCCATGGGCAATCTGCAGCGCTTAATACAGCTCAATCTTGCCAAAAATCGCTTGTCAGGCACCATTCCGCCGTCGATAAAGAATCTCGGCAGCTTGCTGTTCTTGGATTTGAATGATAATCTTCTTTCCGGTCCCGTTCCGGCATTCTTAGGCTCGTTCAGAAATATAACATTTCTTGACCTGTCAACCAATGCTTTAACGGGCGCCATACCGGCGGCACTGGGAAATCTTTCCAGCGTCTTAGAGCTTTCCCTGGCAAGGAACCAGCTAACTGGCCCAGTTCCTTCATCGCTTGGACGTTTAAGTTCCCTCAGCAGTTTATCACTGAACGACAATTTCCTCCAAGGTACGATTCCCGAAGCTCTCTCTAACATCTCAAAGCTTTGGTACCTGAATCTTTCAAGAAACCTGTTCTCTGATCCCCTCCCGTCTTCTCTGGCAAATGCCTCGGCTCTCCTGAGCCTCGACCTTTCCTATAACAAGCTGAATCTTGGGCGCATTCCCGAATGGATTACGCGCAAAGAAATGTCCGACGTGCATTTGGCGGGCTGCGGTATCAGCGGGCGTCTGAGCGACTGGAAACCTACGGCGACCTCCATGTATTCTTCTATCGATTTCTCTGATAATAACCTAACCGGAGAAATAGGGGATATTTTCAAGAACATGTCTCAGCTAGAAAAAATCTTTCTGTCCAACAACTATCTGAAATCGAATCTCTCAGAGGCTTCGTTTCCGGAATTGATCGGCACGGTTGATCTGCACTCAAATCAGCTTTACGGATCCATTAAAAACATCTTGTACGATATCTCTGGTGCCTGTTCTTCCCCCGGCGGATGTCTTGATTTCTTGGATTTGTCCAACAATTTGATCTCCGGCAGCATACCAGAACTTGACGGAGAAAGAAGGGTGAAATGGATGGATCTGTCCAATAATATGCTCACCGGGAGCATTCCGGCTTCCATCTCGATGCTTACCTCTGTGAAGCATCTGGACATATCCAAAAATCATTTAGACGGCAAGTTGCCCCAGAGCTTAGGCCAGTTATCTGAACTGACATGGTTGGATTTGTCAAGAAATGGTTTCAGTGGAGGGCTCCCTGCAGAGATGTTGGGTTTGAAAAAATTGCAGCATGTAAATTTCAGATATAATCATTTGTGTGGTGAAATTCCTCAAGGGAAACCACTGAATATTTTTCCTGCTGCTGCATTTGCTCAGAACGACTGTCTCTGCGGATCGCCTCTTCCTGTGTGCAGGAAAGGGTGAACTAGTTCAGATCAGTTTCATGTTCATTTTGTTTGTCAGTTTTAGTGTCATAATTATTTATTTATTAAGACTCTGTTCTGCC

Ace file of the UniGene sp_v1.1_unigene9795

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Serine-threonine protein kinase, plant-type, putative n=1 Tax=Ricinus communis RepID=B9RGI4_RICCO	-	-	46%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	56%
Blast2go	serine-threonine protein plant-	-	-	58%

Source	GOs	Term	Type	e value	Identity
Blast2go	cell wall	GO:0005618	Cellular Component	0.0	58%

Source	InterPros	Term	Type	Identity
Blast2go	Leucine-rich repeat	IPR001611	-	58%
Blast2go	Leucine-rich repeat, typical subtype	IPR003591	-	58%
Blast2go	Leucine-rich repeat-containing N-terminal, type 2	IPR013210	-	58%

Full-Lengther Next Prediction

Fln status: Putative Complete

Fln database: coniferopsida.fasta

Fln subject: B8LS28

Fln msg: W1: There is no M at the beginning,

Fln protein: ASAILEAVLEPRKPKPKQDSKPKVFCLFQSLRMKVRYGSCIVLLFFISCVYSADEDVEMDGKCVEADLAALVSFKFHIVEDKSEIFNSWSGNHCCAGWEGVECDFQNGRVVKLELQNHESSNDTMYMRGTLSPSLGNLAFLQVLVINGFKEIKGSIPATIGNLSHLRQLYLENNKLSGLIPPSIGKLSLLETLSLNGNRLSGRIPDSMGNLQRLIQLNLAKNRLSGTIPPSIKNLGSLLFLDLNDNLLSGPVPAFLGSFRNITFLDLSTNALTGAIPAALGNLSSVLELSLARNQLTGPVPSSLGRLSSLSSLSLNDNFLQGTIPEALSNISKLWYLNLSRNLFSDPLPSSLANASALLSLDLSYNKLNLGRIPEWITRKEMSDVHLAGCGISGRLSDWKPTATSMYSSIDFSDNNLTGEIGDIFKNMSQLEKIFLSNNYLKSNLSEASFPELIGTVDLHSNQLYGSIKNILYDISGACSSPGGCLDFLDLSNNLISGSIPELDGERRVKWMDLSNNMLTGSIPASISMLTSVKHLDISKNHLDGKLPQSLGQLSELTWLDLSRNGFSGGLPAEMLGLKKLQHVNFRYNHLCGEIPQGKPLNIFPAAAFAQNDCLCGSPLPVCRKG*

Protein Length: 628

Fln nts: CGTCGTGACCTTGGCTGTCAGTGGAGTTAACGCTGAGCCTCAGCAATTCTCGAAGCCGTTCTTGAGCCCCGAAAGCCAAAGCCCAAGCAAGATTCCAAGCCCAAAGTCTTTTGTTTATTTCAAAGTCTGAGAATGAAGGTCCGGTATGGATCCTGTATCGTATTATTGTTCTTTATCAGTTGTGTTTACTCTGCAGACGAAGATGTCGAAATGGATGGAAAGTGCGTGGAAGCAGATCTGGCGGCCCTGGTGAGCTTTAAATTTCACATCGTCGAAGACAAATCCGAGATCTTTAATTCATGGAGCGGTAACCATTGCTGCGCTGGCTGGGAAGGCGTAGAATGCGATTTCCAGAACGGGCGCGTCGTGAAGCTGGAGTTACAGAACCACGAATCGAGTAACGACACTATGTACATGCGCGGAACTCTGTCTCCTTCCCTGGGAAACCTCGCTTTCCTCCAAGTCCTGGTAATCAATGGATTCAAGGAGATCAAGGGATCGATTCCCGCCACGATCGGAAATCTTTCACATCTCAGGCAGCTTTATCTCGAGAACAATAAGCTCTCCGGCCTAATTCCTCCGTCCATCGGAAAATTATCGCTGCTCGAGACGCTTTCCCTCAACGGCAACCGTCTCAGCGGCCGAATTCCCGATTCCATGGGCAATCTGCAGCGCTTAATACAGCTCAATCTTGCCAAAAATCGCTTGTCAGGCACCATTCCGCCGTCGATAAAGAATCTCGGCAGCTTGCTGTTCTTGGATTTGAATGATAATCTTCTTTCCGGTCCCGTTCCGGCATTCTTAGGCTCGTTCAGAAATATAACATTTCTTGACCTGTCAACCAATGCTTTAACGGGCGCCATACCGGCGGCACTGGGAAATCTTTCCAGCGTCTTAGAGCTTTCCCTGGCAAGGAACCAGCTAACTGGCCCAGTTCCTTCATCGCTTGGACGTTTAAGTTCCCTCAGCAGTTTATCACTGAACGACAATTTCCTCCAAGGTACGATTCCCGAAGCTCTCTCTAACATCTCAAAGCTTTGGTACCTGAATCTTTCAAGAAACCTGTTCTCTGATCCCCTCCCGTCTTCTCTGGCAAATGCCTCGGCTCTCCTGAGCCTCGACCTTTCCTATAACAAGCTGAATCTTGGGCGCATTCCCGAATGGATTACGCGCAAAGAAATGTCCGACGTGCATTTGGCGGGCTGCGGTATCAGCGGGCGTCTGAGCGACTGGAAACCTACGGCGACCTCCATGTATTCTTCTATCGATTTCTCTGATAATAACCTAACCGGAGAAATAGGGGATATTTTCAAGAACATGTCTCAGCTAGAAAAAATCTTTCTGTCCAACAACTATCTGAAATCGAATCTCTCAGAGGCTTCGTTTCCGGAATTGATCGGCACGGTTGATCTGCACTCAAATCAGCTTTACGGATCCATTAAAAACATCTTGTACGATATCTCTGGTGCCTGTTCTTCCCCCGGCGGATGTCTTGATTTCTTGGATTTGTCCAACAATTTGATCTCCGGCAGCATACCAGAACTTGACGGAGAAAGAAGGGTGAAATGGATGGATCTGTCCAATAATATGCTCACCGGGAGCATTCCGGCTTCCATCTCGATGCTTACCTCTGTGAAGCATCTGGACATATCCAAAAATCATTTAGACGGCAAGTTGCCCCAGAGCTTAGGCCAGTTATCTGAACTGACATGGTTGGATTTGTCAAGAAATGGTTTCAGTGGAGGGCTCCCTGCAGAGATGTTGGGTTTGAAAAAATTGCAGCATGTAAATTTCAGATATAATCATTTGTGTGGTGAAATTCCTCAAGGGAAACCACTGAATATTTTTCCTGCTGCTGCATTTGCTCAGAACGACTGTCTCTGCGGATCGCCTCTTCCTGTGTGCAGGAAAGGGTGA___ACTAGTTCAGATCAGTTTCATGTTCATTTTGTTTGTCAGTTTTAGTGTCATAATTATTTATTTATTAAGACTCTGTTCTGCC

Fln Alignment:

sp_v1.1_unigene9795___PKVFCL-FQSLRMKVRYGSCIVLLFF-ISCVYSADEDVEMDGKCVEADLAALVSFKFHIVEDKSEIFNSWS-GNHCCAG-WEGVECDFQNGRVVKLELQNHESSNDTMYMRGTLSPSLGNLAFLQVLVINGFKEIKGSIPATIGNLSHLRQLYLENNKLSGLIPPSIGKLSLLETLSLNGNRLSGRIPDSMGNLQRLIQLNLAKNRLSGTIPPSIKNXXXXXXXXXXXXXXXXPVPAFLGSFRNITFLDLSTNALTGAIPAALGNLSSVLELSLARNQLTGPVPXXXXXXXXXXXXXXNDNFLQGTIPEALSNISKLWYLNLSRNLFXXXXXXXXXXXXXXXXXXXXYNKLNLGRIPEWITRKEMSDVHLAGCGISGRLSDWKPTA-TSMYSSIDFSDNNLTGEIGDIFKNMSQLEKIFLSNNYLKSNLSEASFPELIGTVDLHSNQLYGSIKNILYD-ISGACSSPGGCLDFLDLSNNLISGSIPELDGERRVKWMDLSNNMLTGSIPASISMLTSVKHLDISKNHLDGKLPQSLGQLSELTWLDLSRNGFSGGLPAEMLGLKKLQHVNFRYNHLCGEIPQGKPLNIFPAAAFAQNDCLCGSPLPVC
B8LS28______________PGVICICFQ------KHGAILLLLVLSLAAVITSGDDENPGATCFLKDKEALLSFKAAIPEDTTGTLITWTPGTDCCGGGWAGIQCDARSGRVTQLVLQNPEETNDTMYMRGTVSPSLGNLKSLQILIISGLKHITGTIPGSLSDLSWLTQLYIENNRVTGPVPRVLGSLSRLQALSFTGNSLSGPIPLELGELQSLIQLNLGKNRLTGVLPTTLKNIRGLQSLDINGNILSGPIPAFLGSFVNLTYLDLSGNEFTGPIPASIADLSSIQDLSLSRNRLTGEIPYSLGRMNSLSSLSLSENMLVGVIPESISKMSNLWNLNLSKNHLSDPLPSGLAKASALVRLDLSYNNLHLGRIPDWITKKEMTNLHLAGCGVRQCLSTWKPRAMNSLLSSIDLSNNNLTGDISQLLKNMTSLQRVYLSNNSLTTNLSEVSLPDSISVLDLHSNKLYGSIEKLFYDNISESCPSPGGCLEFINLANNEITGRIPEIDGERSIKWLDLSGNRLKGSVPTSISMLKKIERLDFSRNRMVGKIPGAMGELKELRWLDLSWNGLKGRIPGQILGLKHLKHMNLRNNRLCGEIPQGKPLNVFPASAYAHNDCLCGSPLPRC

SNPs (tot: 24)

Position	A %	C %	G %	T %	Probability
22		50	50		1.0
23			50	50	1.0
24		50	50		1.0
25	50		50		1.0
112			50	50	1.0
583	12		87		0.999964
715		85		14	0.993533
932		83	16		0.994512
939	16	83			0.994512
942			16	83	0.994512
943		83	16		0.994512
944	83			16	0.994512
1002		25	75		0.996473
1010			25	75	0.996473
1011	25	75			0.996473
1014			75	25	0.996473
1015	75			25	0.996473
1016	75		25		0.996473
1020		75	25		0.996473
1023	25			75	0.996473
1741	22		77		1.0
1841	16		83		0.994512
1925		20		80	0.995493
1927		66		33	0.997452

SSRs (tot: 1)

Start position	End position	Sequence	Length
1971	1983	TTAT TTAT TTAT T	13

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain