SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene9790

Length: 500 nt

Origin of reads: Uma

UniGene Fasta

>sp_v1.1_unigene9790
CGGAAGATTTCAAATGAAATTTTGGGACGTGTAGAGCTTAGTTCATCTACCATTTCAGTGGATGAAAATTATCTCTCTTAGGAATTTTGAAGAATACCAAAAGCAACTTCAATCGCTTCAAAGAGAAAAGAGTGAGCGTCTCTACAAAGTCATCGAATTTGTCAACACAATCCATGGATTATGCTCTGTCCTTGGCTTGGATTTTGTACGTACGGTAACAGATGTGCATCCAAGCTTGGATGACTCTGAACAATCCAAGAGCATTAGTAATGACACTGTTGATAGGTTGGCTGCGACAATTCAAACATTGCGAGAAGAAGAAAAGAAACGAATGCAAAAGCGTCAAGATTTGGCCACGACTATGCTGGAGCTTTGGAATCTAATGGACACCCCTATGGAAGAGCAACAGATGTTCCAGAATGTCACCTGCAACATTGAGCTTCAGAGCATGAAATATGTTCTCCCAATAGACCCTATCTATGGAATTTATTAATCATGTT

Ace file of the UniGene sp_v1.1_unigene9790

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	ATMAP65-1 (MICROTUBULE-ASSOCIATED PROTEINS 65-1); microtubule binding	-	-	3.0e-39	57%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	52%
Blast2go	microtubule associated protein family protein	-	-	1.38137e-39	81%

Source	GOs	Term	Type	e value	Identity
Blast2go	anaphase	GO:0051322	Biological Process	1.38137e-39	81%
Blast2go	microtubule bundle formation	GO:0001578	Biological Process	1.38137e-39	81%
Blast2go	cytokinesis	GO:0000910	Biological Process	1.38137e-39	81%
Blast2go	microtubule nucleation	GO:0007020	Biological Process	1.38137e-39	81%
Blast2go	positive regulation of microtubule polymerization	GO:0031116	Biological Process	1.38137e-39	81%
Blast2go	microtubule binding	GO:0008017	Molecular Function	1.38137e-39	81%
Blast2go	cortical microtubule, transverse to long axis	GO:0010005	Cellular Component	1.38137e-39	81%
Blast2go	preprophase band	GO:0009574	Cellular Component	1.38137e-39	81%
Blast2go	spindle	GO:0005819	Cellular Component	1.38137e-39	81%
Blast2go	phragmoplast	GO:0009524	Cellular Component	1.38137e-39	81%
Blast2go	nucleus	GO:0005634	Cellular Component	1.38137e-39	81%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Microtubule-associated protein, MAP65/ASE1-type	IPR007145	-	1.38137e-39	81%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: D5AC28

Fln msg: Unexpected stop codon in the beginning of your sequence, Unexpected STOP codon at 3' end. Distance to subject end: 293 aas, your sequence is shorter than subject: 164 - 596

Fln protein: GRFQMKFWDV*SLVHLPFQWMKIISLRNFEEYQKQLQSLQREKSERLYKVIEFVNTIHGLCSVLGLDFVRTVTDVHPSLDDSEQSKSISNDTVDRLAATIQTLREEEKKRMQKRQDLATTMLELWNLMDTPMEEQQMFQNVTCNIELQSMKYVLPIDPIYGIY*

Protein Length: 165

Fln nts: CGGAAGATTTCAAATGAAATTTTGGGACGTGTAGAGCTTAGTTCATCTACCATTTCAGTGGATGAAAATTATCTCTCTTAGGAATTTTGAAGAATACCAAAAGCAACTTCAATCGCTTCAAAGAGAAAAGAGTGAGCGTCTCTACAAAGTCATCGAATTTGTCAACACAATCCATGGATTATGCTCTGTCCTTGGCTTGGATTTTGTACGTACGGTAACAGATGTGCATCCAAGCTTGGATGACTCTGAACAATCCAAGAGCATTAGTAATGACACTGTTGATAGGTTGGCTGCGACAATTCAAACATTGCGAGAAGAAGAAAAGAAACGAATGCAAAAGCGTCAAGATTTGGCCACGACTATGCTGGAGCTTTGGAATCTAATGGACACCCCTATGGAAGAGCAACAGATGTTCCAGAATGTCACCTGCAACATTGAGCTTCAGAGCATGAAATATGTTCTCCCAATAGACCCTATCTATGGAATTTATTAATCATGTT

Fln Alignment:

sp_v1.1_unigene9790___ISLRNFEEYQKQLQSLQREKSERLYKVIEFVNTIHGLCSVLGLDFVRTVTDVHPSLDDS--EQSKSISNDTVDRLAATIQTLREEEKKRMQKRQDLATTMLELWNLMDTPMEEQQMFQNVTCNIELQSMKYVLP
D5AC28______________LSLKKLDEFHDQLQELHREKNDRLQKVFDYVNTVHALSAVMGLDFSKIVSEVHPSLDDSAGNQSKSISNDTLAKLAETVESLKEEKQRRLQKIQELGTTLIELWNLMDITMGEQKHFDHVTCYISASVDEVSMP

SNPs (tot: 9)

Position	A %	C %	G %	T %	Probability
244		50	50		1.0
261	12		87		0.992554
276		50		50	1.0
285	12		87		0.992554
286	12		87		0.992554
289		12	87		0.992554
320	33		66		0.997452
342			66	33	0.997452
347			50	50	1.0

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain