SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene9783

Length: 3557 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

>sp_v1.1_unigene9783
ATGGGGAAGATATATTCAACCTTTTAGATATAACACCGAAAGTTGTGGAATTTTCGTAGACTCTACCACAGCACGCCGACAATTTAGGCCGGGGTCTTGTTGACATGGGACTTGACCCATAAAACCCTGACCTCCTTTGAAGCGGGCTAAAATTCTGACGTCAAGGTCGGACCTCATGGAAAATCACAAAGTTGTGTACGCCGGCACATATATATATATATTCAAACAACAAAGATACTGAAGCGCTGATCTGAGTTCTTTAAACCCTAACATGTCTTCATACTAAACTACGTTACACAGCGGTTGTTTTTCAGGTTTTATAGCTCGGTTGCCTTCTCACTTCATAGCGCCGTTGATACGCAGAAGCCTGCCTCTTTCTTTCTTCACCTCTTGGTTTTTTCCAGTTCTGTGCTTTCGAGTTCTACGAGGTCCGGGTTTCGATCCCCACTGCATCAGTTTCCTGCAACAATGCCTCCCCGCGCTGTGAAGAAGAATGCCGTCACAACCCCCCTCAAAAAAACGGCGGCCAAGGCTCCAAGCAAATCTCCAAAGACCCCGGCCAAGTCCGTGAGCTCTAGCCCACCGAAGGCAGAGCCCGAGGTTGTCGAGAAAGAAGAGTCGAAGCCGTCGCCAAGCGTTGAAACACCGAAAGCCGAAGAGAAAGCCGTCGAGCCGTTTCAAGATTTGAACGAGCCAAGTGTCGAGGCTGAGGCCGAGGCCGAGGCGGAGAAAGAAATTCCCATAGAAGATGCCATTGAGGAGGAGAAAGAATCCACCAAGGATACTGGTAAGCCCTCTGCAGAAGGTAGCGAGGAGGGCGTCAAGGGAATAGACTTGGAGAACAAGGAAATCGATACAGTAATGCACGAAGCACAGGATAATGAGGGCAAGGATAATGAACACCAGGATGAGCGGGTTGGAAATAATGTAGTCATTGGTGAGCAGCGCCAAGGAAATGAAGCTGCTGAAGGAGCAGGATTCCGTGAAGAGGGTGTAGAGGGAGACGGAGGTGATGACCAACATGACGTGGAAATGCCAGCCATGGTCAAGGAGCGGATAAAGCAGAAAGAGTTTGAAGTGTTTGTTGGTGGGCTTGATAAGGACGCCGATGAAGAGGATCTGAAGAAGGTGTTTAGTGAAGTTGGTGAAGTTGTTGAGGTCAGATTGGCAAGGAATCCTCAGACTCAGAAGAATAAGGGCTTTGCATTTGTTCGTTTCGCCACTGTCGAGCAAGCCAAAAAAGCAGTGGCAGAACTCAAGAATCCACAGGTGCGAGGGAAGCAATGCGGAGTTACACGAAGCCAAGATAATGAGACTCTTCACGTACGCAATATTTGTAAATCATGGGCAAAAGAGGCTCTTAAAAAGAAGTTGTCGGAATATGGGATTGACAATATTGAGGAAATAACTTTGATGGAAGATCCACAACAAGAAGGGATGAATAGGGGGTTTGCATTTCTGGAGTTCCCCACTCATCTGGAGGCTACAAATGCCTTCAAGCGCTTGCAGAAGCGAGATGTTTTCTTTGGTATTGATGTTTGTGCTAAGGTTGCATTTGCCAAATCTGGCATTGAGCCGGATGAAGAAGTTATGGCCCAGGTAAAGTCTATTTTTGTTGATGGATTGCCGCCTGCTTGGGATGAAGAGCGAGTTCAGGAGAAATTTAAGGCTTATGGTGAAATTGAAAAAGTGCAATTGGCACGAAATATGCCTACAGCTAAGCGAAAAGATTTTGGGTTCATTTCTTTTACAACTCGTGAAGCAGCGCTGGCCTGCATTGAAGCAGTAAATAAGAATGAGCTAAATGAAGAAGATAACAAGGTTACTTTGAAAGCTACTCTTCGGAAACCTCAGCAAAAGGGACGATCAATTAAAGATGGGGTTCGTGCAGGATATGGTGTTAGTCGGGGGGGCAGGGTGCCATGGGTTCGTGGCATTGCTGATATTGAGCCTAGGAGGATGGGAGCACGTGATAGTCGATTTGGTGTTTATGAAGGAAGGCGCTTTCTAGATGAAAGACGTCAACCTTTTGGAAGGTCATATGATAGGAGAGCATCTGGTCCTGCTTATGTACGAAGTGATTCTAGGAGGAATTATAGAGAAGATGATACTTATTTTGATAGGCGAGCTCGACCTTCAGGCAGATCTGTTGGAACTGTTACTAGACGATCCTCATACCGGGATGATTATGCATATCAAGGGGCTGGATATGCTGAGAGCATGCCTCCACGCAGGCCTCCATACCCCGAGGATAGCTACAGTCATCGCATGAATGGAATGTCAACCTATAGTGATGGACATATTCGTGATTATGCAGGGGTATCTGGGTCCAAGCGTCCATACTCAGATGTGGATGATGATCTTCCATACCCAGGTCGGCATTCCAGGAGTCGTTTGGATTATGATGCAGGGGCTGATTCACGTTACGGAGGAGTGTCCAGGCCAGGACAGGATTCCCAACTAGGTTATGGTGCAGGTAGCAGAACTTATTCAAGTGACTACCTGCCTAGTGGCAATGATGTTGAAGGTGGACCTTATCCATCTGGGGGTTATGGACGTGGCAGTAGCTCAACATCATATTATTGAAAAATTTGGGTACAGAGTCAGATTCAATAAAGCAGAACAGATTTAATTCGAGCACTGGGATACAGTTGTTTAGCCTGGTTCTCTAAGAAAACAAAATCTTTTTGAGTAAATATTATATTCCTCAAGTCTATATAACCTGGTAATTAGGGAGATATTCAAACCAGTGTTAAGTTATGGCTATATATGACGTTCAGAGAGATATTGGGTGTTGTCGAGATGTCAAATTGACAGTATATGATGCCTTAGCAGGAAAAGCTAAGCTTATTTCTTCTCCTGTTGGAGGTTAGCAGATTAGGTGAGCAAGTTAACAACATACTGTTAACCATTTCTGGGTTTTTCCAGAATGAAGTGATAGTTTTTTAGGAGTAATGGCGGATTTAGGATTTGTCTTCAGACGAATGAAACTCAACTTATTACTAATAGGATGTTTCGATAACTTGTTTCTTTCAATGAGTAAGTGTTGCCCCAGTAGGGCCTCAGGAGACAATACACGTTGCATATCATTGATGTTCAGTTATTTTCTACAACATTGCTAAGTATAATTTGGTATTTGATGGAGCTTTACTGAAGCCAGATTTTTGAGTTCCAAGTTCCTTCTATGAAGATAGGAAGGTGGATAAGTTTACTGATATATGGCTACCAAACATTTGAAACGTGGCCAAAATGTGGTTGTTCTTATTTATTGTACTCAGCTTGGCAGCATTTGTGGATTTTGCTATTTTCTTTTGGACACTGTTAAGAAACAACTTTGTGGTAGATAAAAATATCAAGTACTATGTACAATGAAATTGGTTTTCATCAACATTCAAGGATTTGAACTATAAGATATAAGTGGGCAATTTTATGAAGTGTTGCTAAACATGCGATACCTAAGAAATTTGGTATTATTTGGGGTTCTGTTAAAGAGTAATCCAACAACGATCAATTTTGAGACAGGAGTGCACAAACATTTCAATCGTTGCATCTGAATA

Ace file of the UniGene sp_v1.1_unigene9783

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	RNA binding protein, putative n=1 Tax=Ricinus communis RepID=B9SKE9_RICCO	-	-	43%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	68%
Blast2go	rna binding	-	-	61%

Source	InterPros	Term	Type	e value	Identity
Blast2go	RNA recognition motif domain	IPR000504	-	0.0	61%
Blast2go	Nucleotide-binding, alpha-beta plait	IPR012677	-	0.0	61%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NMW5

Fln msg: your sequence is longer than subject: 706 - 219

Fln protein: MPPRAVKKNAVTTPLKKTAAKAPSKSPKTPAKSVSSSPPKAEPEVVEKEESKPSPSVETPKAEEKAVEPFQDLNEPSVEAEAEAEAEKEIPIEDAIEEEKESTKDTGKPSAEGSEEGVKGIDLENKEIDTVMHEAQDNEGKDNEHQDERVGNNVVIGEQRQGNEAAEGAGFREEGVEGDGGDDQHDVEMPAMVKERIKQKEFEVFVGGLDKDADEEDLKKVFSEVGEVVEVRLARNPQTQKNKGFAFVRFATVEQAKKAVAELKNPQVRGKQCGVTRSQDNETLHVRNICKSWAKEALKKKLSEYGIDNIEEITLMEDPQQEGMNRGFAFLEFPTHLEATNAFKRLQKRDVFFGIDVCAKVAFAKSGIEPDEEVMAQVKSIFVDGLPPAWDEERVQEKFKAYGEIEKVQLARNMPTAKRKDFGFISFTTREAALACIEAVNKNELNEEDNKVTLKATLRKPQQKGRSIKDGVRAGYGVSRGGRVPWVRGIADIEPRRMGARDSRFGVYEGRRFLDERRQPFGRSYDRRASGPAYVRSDSRRNYREDDTYFDRRARPSGRSVGTVTRRSSYRDDYAYQGAGYAESMPPRRPPYPEDSYSHRMNGMSTYSDGHIRDYAGVSGSKRPYSDVDDDLPYPGRHSRSRLDYDAGADSRYGGVSRPGQDSQLGYGAGSRTYSSDYLPSGNDVEGGPYPSGGYGRGSSSTSYY*

Protein Length: 707

Fln nts: ATGGGGAAGATATATTCAACCTTTTAGATATAACACCGAAAGTTGTGGAATTTTCGTAGACTCTACCACAGCACGCCGACAATTTAGGCCGGGGTCTTGTTGACATGGGACTTGACCCATAAAACCCTGACCTCCTTTGAAGCGGGCTAAAATTCTGACGTCAAGGTCGGACCTCATGGAAAATCACAAAGTTGTGTACGCCGGCACATATATATATATATTCAAACAACAAAGATACTGAAGCGCTGATCTGAGTTCTTTAAACCCTAACATGTCTTCATACTAAACTACGTTACACAGCGGTTGTTTTTCAGGTTTTATAGCTCGGTTGCCTTCTCACTTCATAGCGCCGTTGATACGCAGAAGCCTGCCTCTTTCTTTCTTCACCTCTTGGTTTTTTCCAGTTCTGTGCTTTCGAGTTCTACGAGGTCCGGGTTTCGATCCCCACTGCATCAGTTTCCTGCAACA_-_ATGCCTCCCCGCGCTGTGAAGAAGAATGCCGTCACAACCCCCCTCAAAAAAACGGCGGCCAAGGCTCCAAGCAAATCTCCAAAGACCCCGGCCAAGTCCGTGAGCTCTAGCCCACCGAAGGCAGAGCCCGAGGTTGTCGAGAAAGAAGAGTCGAAGCCGTCGCCAAGCGTTGAAACACCGAAAGCCGAAGAGAAAGCCGTCGAGCCGTTTCAAGATTTGAACGAGCCAAGTGTCGAGGCTGAGGCCGAGGCCGAGGCGGAGAAAGAAATTCCCATAGAAGATGCCATTGAGGAGGAGAAAGAATCCACCAAGGATACTGGTAAGCCCTCTGCAGAAGGTAGCGAGGAGGGCGTCAAGGGAATAGACTTGGAGAACAAGGAAATCGATACAGTAATGCACGAAGCACAGGATAATGAGGGCAAGGATAATGAACACCAGGATGAGCGGGTTGGAAATAATGTAGTCATTGGTGAGCAGCGCCAAGGAAATGAAGCTGCTGAAGGAGCAGGATTCCGTGAAGAGGGTGTAGAGGGAGACGGAGGTGATGACCAACATGACGTGGAAATGCCAGCCATGGTCAAGGAGCGGATAAAGCAGAAAGAGTTTGAAGTGTTTGTTGGTGGGCTTGATAAGGACGCCGATGAAGAGGATCTGAAGAAGGTGTTTAGTGAAGTTGGTGAAGTTGTTGAGGTCAGATTGGCAAGGAATCCTCAGACTCAGAAGAATAAGGGCTTTGCATTTGTTCGTTTCGCCACTGTCGAGCAAGCCAAAAAAGCAGTGGCAGAACTCAAGAATCCACAGGTGCGAGGGAAGCAATGCGGAGTTACACGAAGCCAAGATAATGAGACTCTTCACGTACGCAATATTTGTAAATCATGGGCAAAAGAGGCTCTTAAAAAGAAGTTGTCGGAATATGGGATTGACAATATTGAGGAAATAACTTTGATGGAAGATCCACAACAAGAAGGGATGAATAGGGGGTTTGCATTTCTGGAGTTCCCCACTCATCTGGAGGCTACAAATGCCTTCAAGCGCTTGCAGAAGCGAGATGTTTTCTTTGGTATTGATGTTTGTGCTAAGGTTGCATTTGCCAAATCTGGCATTGAGCCGGATGAAGAAGTTATGGCCCAGGTAAAGTCTATTTTTGTTGATGGATTGCCGCCTGCTTGGGATGAAGAGCGAGTTCAGGAGAAATTTAAGGCTTATGGTGAAATTGAAAAAGTGCAATTGGCACGAAATATGCCTACAGCTAAGCGAAAAGATTTTGGGTTCATTTCTTTTACAACTCGTGAAGCAGCGCTGGCCTGCATTGAAGCAGTAAATAAGAATGAGCTAAATGAAGAAGATAACAAGGTTACTTTGAAAGCTACTCTTCGGAAACCTCAGCAAAAGGGACGATCAATTAAAGATGGGGTTCGTGCAGGATATGGTGTTAGTCGGGGGGGCAGGGTGCCATGGGTTCGTGGCATTGCTGATATTGAGCCTAGGAGGATGGGAGCACGTGATAGTCGATTTGGTGTTTATGAAGGAAGGCGCTTTCTAGATGAAAGACGTCAACCTTTTGGAAGGTCATATGATAGGAGAGCATCTGGTCCTGCTTATGTACGAAGTGATTCTAGGAGGAATTATAGAGAAGATGATACTTATTTTGATAGGCGAGCTCGACCTTCAGGCAGATCTGTTGGAACTGTTACTAGACGATCCTCATACCGGGATGATTATGCATATCAAGGGGCTGGATATGCTGAGAGCATGCCTCCACGCAGGCCTCCATACCCCGAGGATAGCTACAGTCATCGCATGAATGGAATGTCAACCTATAGTGATGGACATATTCGTGATTATGCAGGGGTATCTGGGTCCAAGCGTCCATACTCAGATGTGGATGATGATCTTCCATACCCAGGTCGGCATTCCAGGAGTCGTTTGGATTATGATGCAGGGGCTGATTCACGTTACGGAGGAGTGTCCAGGCCAGGACAGGATTCCCAACTAGGTTATGGTGCAGGTAGCAGAACTTATTCAAGTGACTACCTGCCTAGTGGCAATGATGTTGAAGGTGGACCTTATCCATCTGGGGGTTATGGACGTGGCAGTAGCTCAACATCATATTATTGA___AAAATTTGGGTACAGAGTCAGATTCAATAAAGCAGAACAGATTTAATTCGAGCACTGGGATACAGTTGTTTAGCCTGGTTCTCTAAGAAAACAAAATCTTTTTGAGTAAATATTATATTCCTCAAGTCTATATAACCTGGTAATTAGGGAGATATTCAAACCAGTGTTAAGTTATGGCTATATATGACGTTCAGAGAGATATTGGGTGTTGTCGAGATGTCAAATTGACAGTATATGATGCCTTAGCAGGAAAAGCTAAGCTTATTTCTTCTCCTGTTGGAGGTTAGCAGATTAGGTGAGCAAGTTAACAACATACTGTTAACCATTTCTGGGTTTTTCCAGAATGAAGTGATAGTTTTTTAGGAGTAATGGCGGATTTAGGATTTGTCTTCAGACGAATGAAACTCAACTTATTACTAATAGGATGTTTCGATAACTTGTTTCTTTCAATGAGTAAGTGTTGCCCCAGTAGGGCCTCAGGAGACAATACACGTTGCATATCATTGATGTTCAGTTATTTTCTACAACATTGCTAAGTATAATTTGGTATTTGATGGAGCTTTACTGAAGCCAGATTTTTGAGTTCCAAGTTCCTTCTATGAAGATAGGAAGGTGGATAAGTTTACTGATATATGGCTACCAAACATTTGAAACGTGGCCAAAATGTGGTTGTTCTTATTTATTGTACTCAGCTTGGCAGCATTTGTGGATTTTGCTATTTTCTTTTGGACACTGTTAAGAAACAACTTTGTGGTAGATAAAAATATCAAGTACTATGTACAATGAAATTGGTTTTCATCAACATTCAAGGATTTGAACTATAAGATATAAGTGGGCAATTTTATGAAGTGTTGCTAAACATGCGATACCTAAGAAATTTGGTATTATTTGGGGTTCTGTTAAAGAGTAATCCAACAACGATCAATTTTGAGACAGGAGTGCACAAACATTTCAATCGTTGCATCTGAATA

Fln Alignment:

sp_v1.1_unigene9783___MVKERIKQKEFEVFVGGXXXXXXXXXXXXVFSEVGEVVEVRLARNPQTQKNKGFAFVRFATVEQAKKAVAELKNPQVRGKQCGVTRSQDNETLHVRNICKSWAKEALKKKLSEYGIDNIEEITLMEDPQQEGMNRGFAFLEFPTHLEATNAFKRLQKRDVFFGIDVCAKVAFAKSGIEPDEEVMAQV
A9NMW5______________VAKERRKRKEFEVFVGGLDKDAAEEDLRKVFSEVGEVVEIRLMMNAQTQKNKGFAFIRYATVEQAKRACTELKNPQVNGKVCGISPSQDNDTLFLGNICKTWTKEALREKLKSFSIDNIEDLTLVEDPENEGMNRGIAFIEFSARSDAMNAYKRLQKRDVVLGTDRTAKVSFAETFVDPDEEVMAQI

SNPs (tot: 74)

Position	A %	C %	G %	T %	Probability
283	25	75			0.996473
285	75			25	0.996473
286	75		25		0.996473
287	75		25		0.996473
288		75	25		0.996473
289			25	75	0.996473
322	83		16		0.999991
341	83	16			0.999991
353		83	16		0.999991
362	16		83		0.999991
449	88		11		0.923564
487	11			88	0.923564
500		22		77	0.999999
580	20		80		0.995493
724	83		16		0.994512
837			12	87	0.992554
839		12	87		0.992554
841	87			12	0.992554
844	87	12			0.992554
846	87			12	0.992554
847	87			12	0.992554
850	87	12			0.992554
851	87			12	0.992554
852	87		12		0.992554
855	12		87		0.992554
856	87	12			0.992554
858	87	12			0.992554
859	12	87			0.992554
863	87			12	0.992554
907	87			12	0.992554
960		12	87		0.992554
1202	37	62			1.0
1311	87	12			0.992554
1312	87		12		0.992554
1315	87			12	0.992554
1323		87	12		0.992554
1324	87		12		0.992554
1330			87	12	0.992554
1477	11			88	0.923564
1478		77	22		0.999999
1480		22		77	0.999999
1486	77	22			0.999999
1487			77	22	0.999999
1489		77		22	0.999999
1490		22		77	0.999999
1493	77			22	0.999999
1494	77	22			0.999999
1862	60		40		1.0
1914		75	25		0.996473
1997			25	75	0.996473
2035	83			16	0.994512
2258		71		28	1.0
2260	87	12			0.992554
2336			16	83	0.994512
2454		80		20	0.995493
2538		13	86		0.999973
2548	85		14		0.999981
2549			14	85	0.999981
2551		85		14	0.999981
2552	85		14		0.999981
2555	14			85	0.999981
2556		14	85		0.999981
2557			85	14	0.999981
2558		14	85		0.999981
2643	88	11			0.999952
2644			11	88	0.999952
2648	88			11	0.999952
2650	11	88			0.999952
2651	88	11			0.999952
2654			88	11	0.999952
2657	88	11			0.999952
2659	88			11	0.999952
2662		11	88		0.999952
3193		81		18	0.999994

SSRs (tot: 1)

Start position	End position	Sequence	Length
208	221	AT AT AT AT AT AT AT	14

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain